Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002098-TA|BGIBMGA002098-PA|IPR003347|Transcription
factor jumonji/aspartyl beta-hydroxylase, IPR013129|Transcription
factor jumonji
(338 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami... 148 5e-36
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami... 140 9e-34
At5g46910.1 68418.m05783 transcription factor jumonji (jmj) fami... 131 6e-31
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom... 129 2e-30
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami... 129 3e-30
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 103 1e-22
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami... 100 2e-21
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 95 6e-20
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 90 2e-18
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 31 1.5
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A) 30 1.9
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden... 30 2.5
At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D) 29 4.5
At1g78770.1 68414.m09180 cell division cycle family protein simi... 29 4.5
At5g41920.1 68418.m05104 scarecrow transcription factor family p... 29 5.9
At3g14540.1 68416.m01842 terpene synthase/cyclase family protein... 29 5.9
At3g07400.1 68416.m00882 lipase class 3 family protein contains ... 28 7.8
>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 954
Score = 148 bits (359), Expect = 5e-36
Identities = 82/239 (34%), Positives = 125/239 (52%), Gaps = 9/239 (3%)
Query: 12 PTLENVEKDYWRVVLLGTDHVCVN-SASIDTGNDGYGFSKNKN-------DAFGKHPWNL 63
P ++++E +YWR+V TD V V A ++T G GF K K D + + WNL
Sbjct: 212 PKVKDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCGWNL 271
Query: 64 KMLSQNPGNVLRSLG-SVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYG 122
LS+ PG+VL + GV VP L++GM FST CWH + H L + Y+HTG K+WYG
Sbjct: 272 NNLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYG 331
Query: 123 IPNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIV 182
IP + +++F ++ P + + L + + P +L+E V + R VQ GEFI+
Sbjct: 332 IPGNHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILT 391
Query: 183 FPKAYSCSIATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIAKDS 241
FPKAY GF +E+V A WL + + + + S + LL+ A ++
Sbjct: 392 FPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEA 450
>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 1183
Score = 140 bits (340), Expect = 9e-34
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 10/239 (4%)
Query: 12 PTLENVEKDYWRVVLLGTDHVCV-NSASIDTGNDGYGFSK--------NKNDAFGKHPWN 62
P LE+VE +YWR+V T+ + V A ++TG G GF K + D + K WN
Sbjct: 283 PALEDVEGEYWRIVDKATEEIEVLYGADLETGVFGSGFPKISSSHNASSSEDKYAKSGWN 342
Query: 63 LKMLSQNPGNVLRSLGS-VLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWY 121
L + PG++L+ GS + GV VP L++GM FS+ CWH + H L + YMH G K+WY
Sbjct: 343 LNNFPRLPGSLLKYEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWY 402
Query: 122 GIPNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFII 181
G+ + +A+ P + + L + + PS L+ V + R VQ+ GEF++
Sbjct: 403 GVGGKDAVKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSKLKTAGVPVHRCVQHAGEFVL 462
Query: 182 VFPKAYSCSIATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIAKD 240
FP+AY +GF +E+V A WL + + T S + LL+ A++
Sbjct: 463 TFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAIELYCQQGRKTSISHDKLLLGAARE 521
>At5g46910.1 68418.m05783 transcription factor jumonji (jmj) family
protein contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain
Length = 707
Score = 131 bits (317), Expect = 6e-31
Identities = 69/200 (34%), Positives = 101/200 (50%), Gaps = 12/200 (6%)
Query: 17 VEKDYWRVVLLGTDHVCVNSASIDTGNDGYGFSKNKNDAFGKHPWNLKMLSQNPGNVLRS 76
+EK++W+ + G + +D G FS D G WNL +S+ P + LR
Sbjct: 132 LEKEFWKEIACGKTETVEYACDVD----GSAFSSAPGDPLGSSKWNLNKVSRLPKSTLRL 187
Query: 77 LG-SVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYGIPNDQSDNFRKAV 135
L S+ GVT P L++GM+FS WH + H L + Y H G K WYGIP + F K V
Sbjct: 188 LETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGSAALKFEKVV 247
Query: 136 ------ETLCPTSCQNKSI-WLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKAYS 188
+ + T+ ++ + L + PP L +HNV + + VQ PGEF++ FP+AY
Sbjct: 248 KECVYNDDILSTNGEDGAFDVLLGKTTIFPPKTLLDHNVPVYKAVQKPGEFVVTFPRAYH 307
Query: 189 CSIATGFTISESVYFATNSW 208
+ GF E+V FA W
Sbjct: 308 AGFSHGFNCGEAVNFAMGDW 327
>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
domain-containing protein similar to PLU-1 protein
(GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
musculus]; similar to Retinoblastoma-binding protein 2
(RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
PF02373: jmjC domain
Length = 1116
Score = 129 bits (312), Expect = 2e-30
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 1/222 (0%)
Query: 54 DAFGKHPWNLKMLSQNPGNVLRSLG-SVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYM 112
D + PWNL + + G++L+++ ++ GVTVP L+LGM+FS+ CWH + H V Y+
Sbjct: 32 DEYCGSPWNLNNMPKLKGSMLQAIRHNINGVTVPWLYLGMLFSSFCWHFEDHCFYSVNYL 91
Query: 113 HTGPGKIWYGIPNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRV 172
H G K WYGIP + F K + P + L + M+ P++L+E+ V + V
Sbjct: 92 HWGEAKCWYGIPGSAASAFEKVMRKTLPDLFDAQPDLLFQLVTMLSPTVLQENKVPVYTV 151
Query: 173 VQNPGEFIIVFPKAYSCSIATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEH 232
+Q PG F+I FPK++ G +E+V FAT WL + R +P++ S E
Sbjct: 152 LQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGGSGAELYRLYRKPSVISHEE 211
Query: 233 LLVSIAKDSRSSLRILQRVYSNLSPIVRDELEYRNALLMRGV 274
LL +AK + + + L I E +R L G+
Sbjct: 212 LLCVVAKGNCCNNEGSIHLKKELLRIYSKEKTWREQLWKSGI 253
>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 806
Score = 129 bits (311), Expect = 3e-30
Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 11/247 (4%)
Query: 9 GDPPTLENVEKDYWRVVLLGTDHVCV-NSASIDTGNDGYGFSK--------NKNDAFGKH 59
GDP ++E +E +YWR++ T+ V V ++ G GFSK N D +
Sbjct: 207 GDP-SVEEIEGEYWRIIEKETNEVKVLYGTDLENPILGSGFSKGVKIPTRRNDMDKYISS 265
Query: 60 PWNLKMLSQNPGNVLRSLG-SVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGK 118
WNL L++ G++L + GV VP L++GM FST CWH + + L + Y H G K
Sbjct: 266 GWNLNNLARLQGSLLSFEDCEISGVQVPWLYVGMCFSTFCWHVEDNHLYSLNYHHFGEPK 325
Query: 119 IWYGIPNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGE 178
+WYG+P + KA+ P + L + P++L+ V + R VQN GE
Sbjct: 326 VWYGVPGSHATGLEKAMRKHLPDLFDEQPDLLHELVTQFSPTILKNEGVPVYRAVQNAGE 385
Query: 179 FIIVFPKAYSCSIATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIA 238
+++ FP+AY GF +E+V A WL + + + T S + +L+ A
Sbjct: 386 YVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQNAVEIYSQETRKTSLSHDKILLGAA 445
Query: 239 KDSRSSL 245
++ SL
Sbjct: 446 FEAVKSL 452
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373:
jmjC domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 103 bits (248), Expect = 1e-22
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 49 SKNKNDAFGKHPWNLKMLSQNPGNVLRSLGSVL-GVTVPTLHLGMVFSTSCWHRDPHGLP 107
S + G+ WN++ +S+ G++L+ + + GVT P +++ M+FS WH + H L
Sbjct: 194 SGGEGGTVGETAWNMRAMSRAEGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLH 253
Query: 108 WVEYMHTGPGKIWYGIPNDQSDNFRKAVETLCPTSCQNKSI---WLPSDIAMIPPSLLRE 164
+ Y+H G GK WYG+P D + F + V N + L ++ P + +
Sbjct: 254 SLNYLHMGAGKTWYGVPKDAALAFEEVVRVHGYGEELNPLVTFSTLGEKTTVMSPEVFVK 313
Query: 165 HNVSLSRVVQNPGEFIIVFPKAYSCSIATGFTISESVYFATNSWL 209
+ R+VQNPGEF++ FP AY + GF E+ AT WL
Sbjct: 314 AGIPCCRLVQNPGEFVVTFPGAYHSGFSHGFNFGEASNIATPEWL 358
>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 708
Score = 100 bits (239), Expect = 2e-21
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 4/234 (1%)
Query: 16 NVEKDYWRVVLLGTDHVCVNSAS-IDTGNDGYGFSKNKNDAFGKHP--WNLKMLSQNPGN 72
++EK+Y ++V + V + +DT G GF + K+ WNL ++ PG+
Sbjct: 248 DIEKEYRQIVESPLIEIGVLYGNDLDTATFGSGFPLSAPSESSKYSSGWNLNSTAKLPGS 307
Query: 73 VLRSLGSVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYGIPNDQSDNFR 132
+L SL V VP L +GM S+ W + L + Y+H G ++WY + F+
Sbjct: 308 LL-SLEDCESVCVPRLSVGMCLSSQFWKSEKERLYSLCYLHVGAPRVWYSVAGCHRSKFK 366
Query: 133 KAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKAYSCSIA 192
A+++ + + + M+ P L + ++R VQ+PG+++I+FP +Y +
Sbjct: 367 AAMKSFILEMSGEQPKKSHNPVMMMSPYQLSVEGIPVTRCVQHPGQYVIIFPGSYYSAFD 426
Query: 193 TGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIAKDSRSSLR 246
GF E FA WL Q +E + ++ S + LL S A+++ L+
Sbjct: 427 CGFNCLEKANFAPLDWLPHGDIAVQVNQEMSKTSLISYDKLLFSAAREAVKCLK 480
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373:
jmjC domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 95.1 bits (226), Expect = 6e-20
Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 61 WNLKMLSQNPGNVLRSL-GSVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKI 119
WNL+M++++PG+V R + + GVT P +++GM+FS WH + H L + Y+HTG K
Sbjct: 265 WNLQMIARSPGSVTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNYLHTGSPKT 324
Query: 120 WYGIPNDQSDNFRKAV--ETLCPTSCQNKSI-WLPSDIAMIPPSLLREHNVSLSRVVQNP 176
WY +P D + +F + + + Q ++ L ++ P ++ + R+VQNP
Sbjct: 325 WYAVPCDYALDFEEVIRKNSYGRNIDQLAALTQLGEKTTLVSPEMIVASGIPCCRLVQNP 384
Query: 177 GEFIIVFPKAY 187
GEF++ FP++Y
Sbjct: 385 GEFVVTFPRSY 395
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 89.8 bits (213), Expect = 2e-18
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 12 PTLENVEKDYWRVVLLGTDHVCVN-SASIDTGNDGYGFSKNKNDAFGKHP-------WNL 63
P+++++E +YWR+V TD V V A ++ G G GF K G WNL
Sbjct: 210 PSVDDIEGEYWRIVEQPTDEVEVYYGADLENGVLGSGFYKRAEKFTGSDMEQYTLSGWNL 269
Query: 64 KMLSQNPGNVLRSLG-SVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYG 122
L + PG+VL + GV VP L++GM FS+ CWH + H L + Y H G K+WYG
Sbjct: 270 NNLPRLPGSVLSFEDCDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYHHFGEPKVWYG 329
Query: 123 IPNDQSDNFRKAVETLCPTSCQNKSIW 149
+P + KA+ P ++ I+
Sbjct: 330 VPGSNATALEKAMRKHLPDLFEDSLIY 356
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 30.7 bits (66), Expect = 1.5
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 101 RDPHGLPWVEYMHTGPGKIWYGIPNDQ-SDNFRKAVETLCPTSCQNKSIWLPSDIAMIPP 159
R+P P+ Y G G YG P Q ++ R+A+ PTS NK + P PP
Sbjct: 403 REPMVKPFDGY---GAGDRKYGYPMPQRAEESRRAMP---PTSYYNKDVNTPQKPLQQPP 456
Query: 160 SLLREHNVSLSRVVQNPGEFIIVFPKAYSCSIATGFTISESVYFATN 206
+ ++ + R P P S S AT FTI+ + N
Sbjct: 457 RQFQSNDTASKRAAHFP-------PGLNSSSSATVFTIASLQQYTNN 496
>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
Length = 84
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 150 LPSDIAMI-PPSLLREHNVSLSRVVQNPGEFIIVFPKAYSC-SIATGFTISESVYFATN 206
L +DI ++ PP+ L + L R+VQ+P F + K C +I T F+ S++V N
Sbjct: 3 LQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDV-KCQGCFNITTVFSHSQTVVMCGN 60
>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
identical to cDNA ribosomal protein S27 (ARS27A)
GI:4193381
Length = 86
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 150 LPSDIAMI-PPSLLREHNVSLSRVVQNPGEFIIVFPKAYSC-SIATGFTISESVYFATN 206
L +DI ++ PP+ L + L R+VQ+P F + K C +I T F+ S++V N
Sbjct: 3 LQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDV-KCQGCFNITTVFSHSQTVVVCGN 60
>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
Length = 84
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 150 LPSDIAMI-PPSLLREHNVSLSRVVQNPGEFIIVFPKAYSC-SIATGFTISESVYFATN 206
L +DI ++ PP L + L R+VQ+P F + K C +I T F+ S++V N
Sbjct: 3 LQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDV-KCQGCFNITTVFSHSQTVVVCGN 60
>At1g78770.1 68414.m09180 cell division cycle family protein similar
to cell division cycle protein GI:603230 from [Homo
sapiens]; contains Pfam profile PF00515 TPR Domain
148977 (apparently not full-length).
Length = 543
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 208 WLE-TVHHVFQELRESCEPTMFSLEHLLVSIAKDSRSSLRILQR 250
W E T+ H+ L ES EPT+ +L H + KD R ++ +R
Sbjct: 433 WFEKTLAHIPSALTESWEPTVVNLAHAYRKLRKD-REAISYYER 475
>At5g41920.1 68418.m05104 scarecrow transcription factor family
protein
Length = 405
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 230 LEHLLVSIAKDSRSSLRILQRVYSNLSPIVRDELEY 265
++H L + ++ +L IL+R+ NL +V EL Y
Sbjct: 243 MQHRLYDVTGNNLETLEILRRLKPNLITVVEQELSY 278
>At3g14540.1 68416.m01842 terpene synthase/cyclase family protein
similar to terpene synthase GB:CAA72074 from
[Arabidopsis thaliana]
Length = 602
Score = 28.7 bits (61), Expect = 5.9
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 150 LPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKAYSCSIATGFTISESVYFATNSW- 208
L ++++IP LL +HN+SL V + + V S + T S YF+ + W
Sbjct: 17 LTPNLSLIPQRLLDKHNLSLKPVKIH--HLVCVRSTKSSDDLETS---RPSTYFSPSLWG 71
Query: 209 -----LETVHHVFQELRESCEPTMFSLEHLLVSIAKDSRSSLRILQRVYS-----NLSPI 258
+ H F EL E ++ +L+S + +R++ + S +
Sbjct: 72 DHFLSVSLDHAEFVELEREIETMKPLVKDMLMSSQSSDKEKIRLIHLLVSLGSSYHFDKE 131
Query: 259 VRDELEYRNALLMRGVKLAEDDVVGIT 285
++D L++ + + G+ + EDD+ I+
Sbjct: 132 IQDILKH-SFTKLDGIIVEEDDLETIS 157
>At3g07400.1 68416.m00882 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 1003
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 206 NSWLETVHHVFQELRESCEPTMFSLEHLLVSIAKD 240
NS E VH V Q E+C + + + LLV +AKD
Sbjct: 927 NSLCELVHRVLQTQEEACFEEL-ARDRLLVELAKD 960
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,887,137
Number of Sequences: 28952
Number of extensions: 384511
Number of successful extensions: 864
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 19
length of query: 338
length of database: 12,070,560
effective HSP length: 81
effective length of query: 257
effective length of database: 9,725,448
effective search space: 2499440136
effective search space used: 2499440136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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