GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002096-TA|BGIBMGA002096-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region, IPR012265|Protein-tyrosine
phosphatase, non-receptor 1/2
         (369 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 29  QNSRAVLMLNKVIEKNEIKCHWYWPHGNGEQH 60
           +  + V+ +   IE NE+  HW+     G Q+
Sbjct: 180 EGDKVVIDVENHIEGNEVTLHWHGVWQRGSQY 211


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 29  QNSRAVLMLNKVIEKNEIKCHWYWPHGNGEQH 60
           +  + V+ +   IE NE+  HW+     G Q+
Sbjct: 180 EGDKVVIDVENHIEGNEVTLHWHGVWQRGSQY 211


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,373
Number of Sequences: 317
Number of extensions: 2960
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 369
length of database: 114,650
effective HSP length: 58
effective length of query: 311
effective length of database: 96,264
effective search space: 29938104
effective search space used: 29938104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)