Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002096-TA|BGIBMGA002096-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region, IPR012265|Protein-tyrosine
phosphatase, non-receptor 1/2
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 102 4e-22
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398... 64 2e-10
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385... 32 0.84
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 31 1.1
12_01_0339 + 2603351-2603891,2604048-2604226 30 2.6
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060... 29 4.5
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 29 4.5
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 29 7.9
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 102 bits (245), Expect = 4e-22
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 7 QYILTQGPLAFTVGHFWLMVWEQNSRAVLMLNKVIEKNEIKCHWYWPHGNGEQHKMLLTD 66
++I TQGPLA T FW MV+E ++ML + + +KC Y P + +
Sbjct: 132 KFISTQGPLAKTFDDFWEMVYEYQCPVIVMLTQF---DSLKCDEYLPL---RKQREAYGK 185
Query: 67 VNLSVEQISEEECPNYSIRVLKLCDLESSESREVIQFHYTTWPDFGVPSSPHAFLEYLKK 126
N+ + + + V+ C+ ESS V Y WPD GVP++ A + K
Sbjct: 186 YNVKITNAKRDSHQLWLRDVMVQCN-ESSRVHSVRHIEYPDWPDHGVPTNTDAVRQIRKW 244
Query: 127 IRDAGALENDVGPAVVHCSAGIGRSGTFCLVDSTMVMIQKADVKSINIEHIMLEMRKYRM 186
+++ +E+ P VVHCSAGIGR+G + + ST+ + D S +++ + +R R+
Sbjct: 245 LQNT-PMEH---PIVVHCSAGIGRTGAYITIHSTIERLLLGDKSSYHLDETVKTLRTQRV 300
Query: 187 GLIQTPDQLRFSYEAIIEGAK 207
G++QT Q F Y AI + K
Sbjct: 301 GMVQTEKQYMFCYRAIADELK 321
>11_01_0514 -
3985204-3985266,3985920-3986061,3986144-3986276,
3986703-3986817,3987496-3987549,3987787-3987912,
3989179-3989319,3989470-3989552,3989643-3989733,
3990318-3990405,3992705-3992832
Length = 387
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 98 REVIQFHYTTWPDFGVPSSPHAFLEYLKKIRDAGALENDVGPAVVHCSAGIGRSGTFCLV 157
R V+ Y+ WPD GVP + LK++ G + P V HCSAGIGR+G + +
Sbjct: 277 RHVLHILYSDWPDHGVPHDSAFVRKILKRLY--GIPKEH--PIVAHCSAGIGRTGAYITI 332
Query: 158 DSTMVMIQKADVKSINIEHIMLEMRKYRMGLIQTPDQ 194
+T+ I D+ ++++ + + R R G++QT +Q
Sbjct: 333 HNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEEQ 369
Score = 43.2 bits (97), Expect = 3e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 7 QYILTQGPLAFTVGHFWLMVWEQNSRAVLMLNKVIEKNEIKCHWYWPHGNGEQ 59
++I TQGPL T G FW MV+E ++M+ K + KC Y P GE+
Sbjct: 140 KFISTQGPLVKTFGDFWQMVYENQCPVIVMVTKF---DGAKCDRYLPTNEGEE 189
>06_02_0346 -
14837982-14838122,14838208-14838327,14838411-14838564,
14838793-14838866,14838962-14839095,14839207-14839326,
14843174-14843308,14843842-14843976,14844343-14845003,
14845103-14845264,14845348-14845510,14880834-14881021
Length = 728
Score = 31.9 bits (69), Expect = 0.84
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 240 RGESLCRPPARPLPAIPSSMSLGDHLSAPVESSSSDE 276
RGES +PP P P P+S S D+ PV S +S+E
Sbjct: 275 RGESRTQPPPDPQPQ-PASHSQPDNQHGPVASQTSEE 310
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 69 LSVEQISEEECPNYSIRVLKLCDL 92
LS+ +SE+ CPN+S+ + KL DL
Sbjct: 671 LSLGAVSEDTCPNFSLELCKLMDL 694
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 30.3 bits (65), Expect = 2.6
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 139 PAVVHCSAGIGRSGTFCLVDSTMVMIQKADVKSINIEHIMLEMRKYRMGLI 189
P VHC+ G GRS C+V + +V + A+ + E+I+ E RK +M +
Sbjct: 173 PVYVHCAFGHGRSA--CVVCAVLVALGIAE-NWKDAENIIREKRKIKMNAV 220
>10_07_0080 -
12704866-12705224,12705389-12705512,12705905-12706041,
12707971-12708106,12710346-12710759
Length = 389
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 241 GESLCRPPARPLPAIPSSMSLGDHLSAPVESSSSD 275
G + + P PLPA PSS + D ++A V S D
Sbjct: 30 GSAAAKNPGTPLPARPSSCNSNDGVAAAVMPSPED 64
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 95 SESREVIQFHYTTWPDFGVPSSPHAFLEYLKKIRDAGALENDVGP 139
S + + +++T W F V S P +L IRD L VGP
Sbjct: 153 SANENAMLYNFTNWLPFTVESVPVVLEWWLDLIRDGAILPLSVGP 197
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 240 RGESLCRPPARPLPAIPSSMSLGDHLSAPVESSSSDE 276
RGES +PP P P + +S S D PV S +S+E
Sbjct: 370 RGESRTQPPLGPQPQL-ASHSQPDSQHGPVASPTSEE 405
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,564
Number of Sequences: 37544
Number of extensions: 388818
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 10
length of query: 369
length of database: 14,793,348
effective HSP length: 83
effective length of query: 286
effective length of database: 11,677,196
effective search space: 3339678056
effective search space used: 3339678056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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