GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002096-TA|BGIBMGA002096-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region, IPR012265|Protein-tyrosine
phosphatase, non-receptor 1/2
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...   123   2e-28
At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i...    71   2e-12
At2g31730.1 68415.m03874 ethylene-responsive protein, putative s...    32   0.53 
At2g27410.1 68415.m03312 hypothetical protein contains Pfam prof...    31   0.93 
At4g01810.1 68417.m00238 protein transport protein-related relat...    31   1.2  
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    29   5.0  
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ...    29   6.6  
At4g03450.1 68417.m00472 ankyrin repeat family protein contains ...    29   6.6  

>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score =  123 bits (297), Expect = 2e-28
 Identities = 66/200 (33%), Positives = 114/200 (57%), Gaps = 9/200 (4%)

Query: 7   QYILTQGPLAFTVGHFWLMVWEQNSRAVLMLNKVIEKNE-IKCHWYWPHGNGEQHKMLLT 65
           Q+I TQGPL  T+  FW MV +Q+   ++ML ++++ N  +KC  Y+   +G +      
Sbjct: 133 QFIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPRE---FG 189

Query: 66  DVNLSVEQISEEECPNYSIRVLKLCDLESSES-REVIQFHYTTWPDFGVPSSPHAFLEYL 124
           +++L+ + I   +  +  +R L++   E+ +    V+   Y  WPD GVP    A  E L
Sbjct: 190 NISLTTKWIKTTDT-SLMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVREIL 248

Query: 125 KKIRDAGALENDVGPAVVHCSAGIGRSGTFCLVDSTMVMIQKADVKSINIEHIMLEMRKY 184
           K++     +   +GP +VHCSAGIGR+GT+C + +T+  I   D+ ++++   +   RK 
Sbjct: 249 KRLYQ---VPPSLGPIIVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLAKTVALFRKQ 305

Query: 185 RMGLIQTPDQLRFSYEAIIE 204
           R+G++QT DQ  F Y AI++
Sbjct: 306 RIGMVQTMDQYFFCYNAIVD 325


>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 277

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 9/140 (6%)

Query: 7   QYILTQGPLAFTVGHFWLMVWEQNSRAVLMLNKVIEKNE-IKCHWYWPHGNGEQHKMLLT 65
           Q+I TQGPL  T+  FW MV +Q+   ++ML ++++ N  +KC  Y+   +G +      
Sbjct: 133 QFIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPRE---FG 189

Query: 66  DVNLSVEQISEEECPNYSIRVLKLCDLESSES-REVIQFHYTTWPDFGVPSSPHAFLEYL 124
           +++L+ + I   +  +  +R L++   E+ +    V+   Y  WPD GVP    A  E L
Sbjct: 190 NISLTTKWIKTTD-TSLMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVREIL 248

Query: 125 KKIRDAGALENDVGPAVVHC 144
           K++     +   +GP +VHC
Sbjct: 249 KRLYQ---VPPSLGPIIVHC 265


>At2g31730.1 68415.m03874 ethylene-responsive protein, putative
           similar to ethylene-inducible ER33 protein [Lycopersicon
           esculentum] gi|5669656|gb|AAD46413
          Length = 153

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 58  EQHKMLLTDVNLSVEQISEEECPNYSIRVLKLCDLESSESREVIQFH-YTTWPDFGVPSS 116
           EQ K+L      +    +EEE   YS+R   LC +    + EV Q +    W     P+S
Sbjct: 80  EQVKVLSAPYLQATPSTTEEEVEEYSLRSKGLCLVPLEYTSEVAQTNGADIWAPVKTPTS 139

Query: 117 PHAF 120
            HAF
Sbjct: 140 SHAF 143


>At2g27410.1 68415.m03312 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 309

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 20/57 (35%), Positives = 24/57 (42%)

Query: 83  SIRVLKLCDLESSESREVIQFHYTTWPDFGVPSSPHAFLEYLKKIRDAGALENDVGP 139
           S R L   DL+ +E+R  + F     PDF          E   KIRD G   N V P
Sbjct: 142 STRQLYKTDLKKTEARLSVPFKQVKTPDFLTEDETRIIHENAMKIRDNGVPVNFVDP 198


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 56  NGEQHKMLLTDVNLSVEQISEEECPNYSIRVLKLCDLESSESREVIQFHYT 106
           + E H+   +D  LS++ +S EE  ++S+ +    D++S        FHY+
Sbjct: 551 HSETHETFKSDAALSIQMLSVEETQSFSLSMENKRDIKSDHVFFQFAFHYS 601


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 23  WLMVWEQNSRAVLMLNKVIEKNEIKCHWYWPHGNGEQHKMLLTD 66
           W   WE+ +  + ++N+ + K E+ C W      G+ H+ ++ D
Sbjct: 602 WAGKWEEAAEMMKLMNERMLKKELSCSWI--QEKGKIHRFIVGD 643


>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
           protein predicted proteins - Arabidopsis thaliana
          Length = 259

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 41  IEKNEIKCHWYWPHGNGEQHKMLLTDVNLSVEQISEEECPNYSIRVLKLCDLESSESREV 100
           I+ NE   +  +    G +  +LL+  +++ + +  E  PNYS       + +SS +  V
Sbjct: 37  IQSNEHSAYVTFKETQGAETAVLLSGASIADQSVIIELAPNYSPPAAPHAETQSSGAESV 96

Query: 101 IQ 102
           +Q
Sbjct: 97  VQ 98


>At4g03450.1 68417.m00472 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 641

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 120 FLEYLKKIRDAGALENDVGPAVVHCSAGIGRSGTFCL 156
           FL+ LK   D+  L N  G  ++H +A  G++GT+ L
Sbjct: 307 FLKLLKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLL 343


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,046,585
Number of Sequences: 28952
Number of extensions: 316861
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 12,070,560
effective HSP length: 82
effective length of query: 287
effective length of database: 9,696,496
effective search space: 2782894352
effective search space used: 2782894352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)