GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002095-TA|BGIBMGA002095-PA|IPR000242|Tyrosine specific
protein phosphatase, IPR012265|Protein-tyrosine phosphatase,
non-receptor 1/2
         (98 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    40   2e-04
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    39   7e-04
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812     26   4.1  
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    25   7.2  
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    25   7.2  
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403...    25   7.2  

>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 25  YQRVGQECQKLPYTCVEAKRPHNKALNRYRDVNPYDHSRIVLQR------SENDYINANL 78
           ++R+     +L  +  EA+   N+  NRY DV P+D +R+ L+R      S NDYINA+ 
Sbjct: 62  FRRLQDTRHELMRSSNEARNAANREKNRYIDVVPFDTTRVRLKRSTTSQTSSNDYINASF 121

Query: 79  VRL 81
           +++
Sbjct: 122 IKV 124


>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 6/47 (12%)

Query: 42  AKRPHNKALNRYRDVNPYDHSRIVLQ------RSENDYINANLVRLE 82
           A+ P N+  NRY DV P+D +R+ L+       S N+YINA+L+  +
Sbjct: 86  AQNPANREKNRYSDVMPFDETRVRLKPSASDHPSSNEYINASLIETD 132


>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
          Length = 492

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 16  MHRNGWPL---IYQRVGQECQKLPYTCVEAKRPHNKALNRYRDV 56
           +HR G  L   + QR   E +K  Y C E   PH+ A     D+
Sbjct: 83  LHRRGHNLPWKLKQRSSTEAKKKVYVCPEITCPHHDATRALGDL 126


>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 31  ECQKLPYTCVEAKRPHNKALNRYRDVNPYDHSRIVLQRSENDYINANLVRLELYE 85
           E Q+L   C E K   +    +++ +  +D  R  L+   N  + AN+     +E
Sbjct: 463 EVQRLYKLCAEWKEAEDSLKKKWKKIEEFDARRSELECIYNALLRANMEASTFWE 517


>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 36  PYTCVEAKRPHNKALNRYRDVNPYDHSRIVLQRSENDYINANLVRLE 82
           P      ++PH   L++ + V P   S +VLQ+ +   +  N + L+
Sbjct: 485 PVMSQHQQQPHQ--LSQQQQVQPSQQSSVVLQQHQAQLLQQNAIHLQ 529


>02_01_0548 +
           4035265-4035431,4035517-4035651,4035859-4036081,
           4036282-4036468,4036627-4036811,4037435-4037572,
           4037995-4038123
          Length = 387

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 20  GWPLIYQRVGQECQKLPYTCVEAKRPHNKALNRYRDVNPYDHSRIVLQRSEN-DYINANL 78
           GW L Y  V   C +L     EAKR    ALN  R +     S + L+RS     ++ N 
Sbjct: 33  GWGL-YNSVSMFCVRLMQLEEEAKRDPTCALNMERLLEARILSAVDLRRSLGLPSVHTNA 91

Query: 79  VRLELYEPKGGLISG 93
            R  L   +G  +SG
Sbjct: 92  YR--LINSEGDRLSG 104


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,616
Number of Sequences: 37544
Number of extensions: 105568
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 6
length of query: 98
length of database: 14,793,348
effective HSP length: 71
effective length of query: 27
effective length of database: 12,127,724
effective search space: 327448548
effective search space used: 327448548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)