GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002095-TA|BGIBMGA002095-PA|IPR000242|Tyrosine specific
protein phosphatase, IPR012265|Protein-tyrosine phosphatase,
non-receptor 1/2
         (98 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   2.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   6.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    19   8.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    19   8.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 14/78 (17%)

Query: 3   PKLNSIEAEYLDIMHRNGWPLIYQRVGQECQKLPYTCVEAKRPHNKALNR---YRDVNP- 58
           P+ +   A+YLD++ RN       ++ + C     T  E      KAL R    RDV P 
Sbjct: 362 PENHLKNAKYLDVIERNSGAT--DKIIRWC-----TWSEGDLEKCKALTRAAYSRDVRPK 414

Query: 59  YDHSRIVLQRSENDYINA 76
           YD     L++S++D + A
Sbjct: 415 YD---CTLEKSQDDCLKA 429


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 14/78 (17%)

Query: 3   PKLNSIEAEYLDIMHRNGWPLIYQRVGQECQKLPYTCVEAKRPHNKALNR---YRDVNP- 58
           P+ +   A+YLD++ RN       ++ + C     T  E      KAL R    RDV P 
Sbjct: 362 PENHLKNAKYLDVIERNSGAT--DKIIRWC-----TWSEGDLEKCKALTRAAYSRDVRPK 414

Query: 59  YDHSRIVLQRSENDYINA 76
           YD     L++S++D + A
Sbjct: 415 YD---CTLEKSQDDCLKA 429


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 14/78 (17%)

Query: 3   PKLNSIEAEYLDIMHRNGWPLIYQRVGQECQKLPYTCVEAKRPHNKALNR---YRDVNP- 58
           P+ +   A+YLD++ RN       ++ + C     T  E      KAL R    RDV P 
Sbjct: 362 PENHLKNAKYLDVIERNSGAT--DKIIRWC-----TWSEGDLEKCKALTRAAYSRDVRPK 414

Query: 59  YDHSRIVLQRSENDYINA 76
           YD     L++S++D + A
Sbjct: 415 YD---CTLEKSQDDCLKA 429


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 5/22 (22%), Positives = 16/22 (72%)

Query: 4   KLNSIEAEYLDIMHRNGWPLIY 25
           +++  +++ +DI  R G+P+++
Sbjct: 353 RVHKTQSQTIDIYSRIGFPILF 374


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 60  DHSRIVLQRSENDYINANLVRLELYEPK 87
           D S   L   E D++  NL+R+   E K
Sbjct: 346 DESANNLSIEELDFVKLNLIRIAGTENK 373


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 60  DHSRIVLQRSENDYINANLVRLELYEPK 87
           D S   L   E D++  NL+R+   E K
Sbjct: 361 DESANNLSIEELDFVKLNLIRIAGTENK 388


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,721
Number of Sequences: 429
Number of extensions: 1453
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 98
length of database: 140,377
effective HSP length: 49
effective length of query: 49
effective length of database: 119,356
effective search space:  5848444
effective search space used:  5848444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)