GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002095-TA|BGIBMGA002095-PA|IPR000242|Tyrosine specific
protein phosphatase, IPR012265|Protein-tyrosine phosphatase,
non-receptor 1/2
         (98 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i...    33   0.031
At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...    33   0.031
At3g46930.1 68416.m05093 protein kinase family protein contains ...    27   1.5  
At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    27   2.7  
At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138...    26   3.5  
At5g31685.1 68418.m03766 expressed protein ; expression supporte...    26   4.7  
At1g66920.1 68414.m07605 serine/threonine protein kinase, putati...    26   4.7  
At1g56240.1 68414.m06465 SKP1 interacting partner 3-related cont...    25   6.2  
At5g38880.1 68418.m04702 expressed protein                             25   8.2  
At2g46380.1 68415.m05773 hypothetical protein weak similarity to...    25   8.2  

>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 277

 Score = 33.1 bits (72), Expect = 0.031
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 47  NKALNRYRDVNPYDHSRIVL----QRSENDYINANLVR 80
           N   NRY DV P+D +RIVL      S   Y+NA+L++
Sbjct: 87  NVEKNRYSDVVPFDKNRIVLNPCKDSSAKGYVNASLIK 124


>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score = 33.1 bits (72), Expect = 0.031
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 47  NKALNRYRDVNPYDHSRIVL----QRSENDYINANLVR 80
           N   NRY DV P+D +RIVL      S   Y+NA+L++
Sbjct: 87  NVEKNRYSDVVPFDKNRIVLNPCKDSSAKGYVNASLIK 124


>At3g46930.1 68416.m05093 protein kinase family protein contains
          protein kinase domain, Pfam:PF00069
          Length = 475

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 25 YQRVGQECQKLPYTCVEAKRPHNKALNRYRDVNPYDH 61
          Y+ +    + +P+T  + K   N   N+ R V+P  H
Sbjct: 20 YRMITPSLESMPFTVNQEKMQRNPVTNKKRSVSPLPH 56


>At1g22610.1 68414.m02823 C2 domain-containing protein contains
          INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 36 PYTCVEAKRPHNKALNRYRDVNPYDHSRIVLQRSENDYINANLVRLELYEPK 87
          P+  VE      +   R++D+NP  + ++V    +   +N   V + +Y+ +
Sbjct: 25 PFVEVEFDEQRQRTQTRFKDLNPQWNEKLVFNVGDLKRLNNKTVDVTVYDDR 76


>At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter protein -related'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
          Length = 656

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MNPKLNSIEAEYLDIMHRNGWPLIYQRVGQECQKLPY-TCVEAKRPHNKALNRYR 54
           + P++  +  E +D + ++G P +    G   +KL Y  C E  +  +  L +YR
Sbjct: 242 LRPEIQVLAKEMVDRLRKSGQPFLAYHPGLVREKLAYHGCAELFQDIHSELIQYR 296


>At5g31685.1 68418.m03766 expressed protein ; expression supported
          by MPSS
          Length = 519

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 1  MNPKLNSIEAEYLDIMHRNGWPLIYQR 27
          ++P ++S  A+ +D  HRN  P IY+R
Sbjct: 8  VSPSVSSRLADSIDSNHRNDLPPIYKR 34


>At1g66920.1 68414.m07605 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 609

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 53  YRDVNPYDHSRIVLQRSENDYINANLVRLELY 84
           Y+D+   D+ R+++ RSE D I   +  + L+
Sbjct: 521 YKDLEKGDNGRLIVNRSEEDEIAKKMTLVGLW 552


>At1g56240.1 68414.m06465 SKP1 interacting partner 3-related
           contains similarity to SKP1 interacting partner 3
           GI:10716951 from [Arabidopsis thaliana]
          Length = 284

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 65  VLQRSENDYINANLVRLELYEPKGGLI 91
           V +  E+D +N +L  ++ Y+ KGG++
Sbjct: 246 VTREGEDDEVNMSLTEVKGYQLKGGIV 272


>At5g38880.1 68418.m04702 expressed protein 
          Length = 796

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 31  ECQKLPYTCVEAKRPHNKALNRYRDVNPYDHSRIVLQRSENDYINANL 78
           E Q+L   C E K   +    +++ +  +D  R  L+      + AN+
Sbjct: 480 EIQRLNKLCAERKEAEDSLKKKWKKIEEFDARRSELETIYTTLLKANM 527


>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 732

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 18/71 (25%), Positives = 28/71 (39%)

Query: 2   NPKLNSIEAEYLDIMHRNGWPLIYQRVGQECQKLPYTCVEAKRPHNKALNRYRDVNPYDH 61
           +P     E   +++  R+G      R  Q+   L  T +        ++    DVN Y H
Sbjct: 503 SPLHKQFEYSSINVRDRSGPRSQSSRSEQDRVTLSKTAMRQNSMKEASVAIEMDVNDYSH 562

Query: 62  SRIVLQRSEND 72
           +  V Q S ND
Sbjct: 563 NNEVSQDSAND 573


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,149
Number of Sequences: 28952
Number of extensions: 92246
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 10
length of query: 98
length of database: 12,070,560
effective HSP length: 70
effective length of query: 28
effective length of database: 10,043,920
effective search space: 281229760
effective search space used: 281229760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)