Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002093-TA|BGIBMGA002093-PA|IPR004853|Protein of unknown
function DUF250
         (255 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052095-1|AAK93519.1|  469|Drosophila melanogaster SD04505p pro...   178   5e-45
AE014296-666|AAF47777.1|  469|Drosophila melanogaster CG14971-PA...   178   5e-45
AY129459-1|AAM76201.1|  373|Drosophila melanogaster RH08077p pro...    39   0.008
AE014296-2909|AAF49343.1|  373|Drosophila melanogaster CG3874-PA...    39   0.008
AB062677-1|BAB62105.1|  373|Drosophila melanogaster UDP-sugar tr...    39   0.008
BT003539-1|AAO39543.1|  373|Drosophila melanogaster RE05288p pro...    34   0.17 
AE014298-3170|AAF50956.1|  373|Drosophila melanogaster CG14621-P...    34   0.17 
AE014297-433|AAN13238.1|  590|Drosophila melanogaster CG31556-PA...    31   1.2  
BT022802-1|AAY55218.1|  720|Drosophila melanogaster IP13731p pro...    29   6.3  
BT022794-1|AAY55210.1|  720|Drosophila melanogaster IP13631p pro...    29   6.3  
BT022771-1|AAY55187.1|  720|Drosophila melanogaster IP13931p pro...    29   6.3  
BT022762-1|AAY55178.1|  720|Drosophila melanogaster IP13831p pro...    29   6.3  
AE014134-2277|AAF53241.1|  652|Drosophila melanogaster CG5142-PA...    29   6.3  

>AY052095-1|AAK93519.1|  469|Drosophila melanogaster SD04505p
           protein.
          Length = 469

 Score =  178 bits (434), Expect = 5e-45
 Identities = 96/256 (37%), Positives = 147/256 (57%), Gaps = 7/256 (2%)

Query: 1   MIAAGLIMFTYKATQFNIEXXXXXXXXXXXXXXRWTFAQLLMQKAKLGLHNPVDMVFHVQ 60
           +I  GL+MFTYK+T FN                RW+FAQ +MQK+KLGLHNP+DM++++Q
Sbjct: 215 LIGTGLLMFTYKSTDFNALGFFFILFASLSSGLRWSFAQFIMQKSKLGLHNPIDMIYYMQ 274

Query: 61  PWMFLALIPFTAIFEGLDCIMFXXXXXXXXXXXXX---XKVTVGATIAFAMEISEFLVVT 117
           PWM  +L+P     EG   I                   +++ GA +AF ME SEFLV+ 
Sbjct: 275 PWMIASLVPLVIGIEGAGLIAVIEDLHNHTSNEITWAIARISAGALLAFLMEFSEFLVLC 334

Query: 118 YTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKMLIIRAVE 177
            TSSLTLSIAGIFK++C L LAV +  D LS+IN +GL +CL GI+ H++HK   ++ ++
Sbjct: 335 KTSSLTLSIAGIFKDICQLALAVTIRKDHLSVINYIGLIICLAGIVCHLLHKYSNMKEMQ 394

Query: 178 SAVVVEVDNFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKDETDEPLLTEKSWLSEDS 237
               +++DN +  +  SP + K    + I  ++  S  +      ++    ++S  S   
Sbjct: 395 RQQELQLDNDQ--EESSPGEYKFNDGSAIVGVHVKSHSTLTVPLLEQTDSEDESGASNKQ 452

Query: 238 DVDANVVLYEVLQRRD 253
             +A+ V+++VL+RRD
Sbjct: 453 --NASDVIFDVLKRRD 466


>AE014296-666|AAF47777.1|  469|Drosophila melanogaster CG14971-PA
           protein.
          Length = 469

 Score =  178 bits (434), Expect = 5e-45
 Identities = 96/256 (37%), Positives = 147/256 (57%), Gaps = 7/256 (2%)

Query: 1   MIAAGLIMFTYKATQFNIEXXXXXXXXXXXXXXRWTFAQLLMQKAKLGLHNPVDMVFHVQ 60
           +I  GL+MFTYK+T FN                RW+FAQ +MQK+KLGLHNP+DM++++Q
Sbjct: 215 LIGTGLLMFTYKSTDFNALGFFFILFASLSSGLRWSFAQFIMQKSKLGLHNPIDMIYYMQ 274

Query: 61  PWMFLALIPFTAIFEGLDCIMFXXXXXXXXXXXXX---XKVTVGATIAFAMEISEFLVVT 117
           PWM  +L+P     EG   I                   +++ GA +AF ME SEFLV+ 
Sbjct: 275 PWMIASLVPLVIGIEGAGLIAVIEDLHNHTSNEITWAIARISAGALLAFLMEFSEFLVLC 334

Query: 118 YTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKMLIIRAVE 177
            TSSLTLSIAGIFK++C L LAV +  D LS+IN +GL +CL GI+ H++HK   ++ ++
Sbjct: 335 KTSSLTLSIAGIFKDICQLALAVTIRKDHLSVINYIGLIICLAGIVCHLLHKYSNMKEMQ 394

Query: 178 SAVVVEVDNFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKDETDEPLLTEKSWLSEDS 237
               +++DN +  +  SP + K    + I  ++  S  +      ++    ++S  S   
Sbjct: 395 RQQELQLDNDQ--EESSPGEYKFNDGSAIVGVHVKSHSTLTVPLLEQTDSEDESGASNKQ 452

Query: 238 DVDANVVLYEVLQRRD 253
             +A+ V+++VL+RRD
Sbjct: 453 --NASDVIFDVLKRRD 466


>AY129459-1|AAM76201.1|  373|Drosophila melanogaster RH08077p
           protein.
          Length = 373

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 100 VGATIAFAMEISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQL-SLINVVGLAVC 158
           +   + F +  S  L   + S+LT +I G  K +C+  L + + GD + S +N +G+ + 
Sbjct: 282 LSCVMGFILSYSTILCTQFNSALTTTIVGCLKNICVTYLGMFIGGDYVFSWLNCIGINIS 341

Query: 159 LL 160
           +L
Sbjct: 342 VL 343


>AE014296-2909|AAF49343.1|  373|Drosophila melanogaster CG3874-PA
           protein.
          Length = 373

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 100 VGATIAFAMEISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQL-SLINVVGLAVC 158
           +   + F +  S  L   + S+LT +I G  K +C+  L + + GD + S +N +G+ + 
Sbjct: 282 LSCVMGFILSYSTILCTQFNSALTTTIVGCLKNICVTYLGMFIGGDYVFSWLNCIGINIS 341

Query: 159 LL 160
           +L
Sbjct: 342 VL 343


>AB062677-1|BAB62105.1|  373|Drosophila melanogaster UDP-sugar
           transporter protein.
          Length = 373

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 100 VGATIAFAMEISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQL-SLINVVGLAVC 158
           +   + F +  S  L   + S+LT +I G  K +C+  L + + GD + S +N +G+ + 
Sbjct: 282 LSCVMGFILSYSTILCTQFNSALTTTIVGCLKNICVTYLGMFIGGDYVFSWLNCIGINIS 341

Query: 159 LL 160
           +L
Sbjct: 342 VL 343


>BT003539-1|AAO39543.1|  373|Drosophila melanogaster RE05288p
           protein.
          Length = 373

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 12/54 (22%), Positives = 34/54 (62%)

Query: 110 ISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGII 163
           I  F V++  + LT ++A   K + ++ +++ + G+ ++ +N VG+ + ++G++
Sbjct: 244 IIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVL 297


>AE014298-3170|AAF50956.1|  373|Drosophila melanogaster CG14621-PA
           protein.
          Length = 373

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 12/54 (22%), Positives = 34/54 (62%)

Query: 110 ISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGII 163
           I  F V++  + LT ++A   K + ++ +++ + G+ ++ +N VG+ + ++G++
Sbjct: 244 IIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVL 297


>AE014297-433|AAN13238.1|  590|Drosophila melanogaster CG31556-PA
           protein.
          Length = 590

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 98  VTVGATIAFAMEI-SEFLVVTYTSSLTLSIAGIFKEMCILV-LAVKVSGDQLSLINVVGL 155
           V V   +  A+++  + +VV     + + + G+   + + V  AV V GD + ++ VVG+
Sbjct: 259 VVVVVEVGIAVDVVDDSVVVVVDVGIAVDVVGVSVVVVLDVGTAVDVVGDSVVVVVVVGI 318

Query: 156 AVCLLG-IIGHIVHKMLIIRAVESAVVVEVDNFEAV 190
           AV ++G  +  +V     +  V+ +VVV V+   AV
Sbjct: 319 AVEVVGDCVVVVVDVGSAVDVVDDSVVVVVEGGIAV 354


>BT022802-1|AAY55218.1|  720|Drosophila melanogaster IP13731p
           protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/96 (19%), Positives = 42/96 (43%)

Query: 112 EFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKML 171
           E +V  ++  +    A +   +C+  +    + +   L+  V  A  + G +G   H + 
Sbjct: 540 EPIVRQHSDDIMSVSAAVLANLCVSYIMTFQNEEAEELMRKVEKAEEMKGNLGKQYHHLC 599

Query: 172 IIRAVESAVVVEVDNFEAVKNRSPNKLKSVARNKIY 207
           I+  V   +     N+E   +R  + L+S + N++Y
Sbjct: 600 IVNLVVGTLYCAKSNYEFGLSRIAHALESGSGNRLY 635


>BT022794-1|AAY55210.1|  720|Drosophila melanogaster IP13631p
           protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/96 (19%), Positives = 42/96 (43%)

Query: 112 EFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKML 171
           E +V  ++  +    A +   +C+  +    + +   L+  V  A  + G +G   H + 
Sbjct: 540 EPIVRQHSDDIMSVSAAVLANLCVSYIMTFQNEEAEELMRKVEKAEEMKGNLGKQYHHLC 599

Query: 172 IIRAVESAVVVEVDNFEAVKNRSPNKLKSVARNKIY 207
           I+  V   +     N+E   +R  + L+S + N++Y
Sbjct: 600 IVNLVVGTLYCAKSNYEFGLSRIAHALESGSGNRLY 635


>BT022771-1|AAY55187.1|  720|Drosophila melanogaster IP13931p
           protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/96 (19%), Positives = 42/96 (43%)

Query: 112 EFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKML 171
           E +V  ++  +    A +   +C+  +    + +   L+  V  A  + G +G   H + 
Sbjct: 540 EPIVRQHSDDIMSVSAAVLANLCVSYIMTFQNEEAEELMRKVEKAEEMKGNLGKQYHHLC 599

Query: 172 IIRAVESAVVVEVDNFEAVKNRSPNKLKSVARNKIY 207
           I+  V   +     N+E   +R  + L+S + N++Y
Sbjct: 600 IVNLVVGTLYCAKSNYEFGLSRIAHALESGSGNRLY 635


>BT022762-1|AAY55178.1|  720|Drosophila melanogaster IP13831p
           protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/96 (19%), Positives = 42/96 (43%)

Query: 112 EFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKML 171
           E +V  ++  +    A +   +C+  +    + +   L+  V  A  + G +G   H + 
Sbjct: 540 EPIVRQHSDDIMSVSAAVLANLCVSYIMTFQNEEAEELMRKVEKAEEMKGNLGKQYHHLC 599

Query: 172 IIRAVESAVVVEVDNFEAVKNRSPNKLKSVARNKIY 207
           I+  V   +     N+E   +R  + L+S + N++Y
Sbjct: 600 IVNLVVGTLYCAKSNYEFGLSRIAHALESGSGNRLY 635


>AE014134-2277|AAF53241.1|  652|Drosophila melanogaster CG5142-PA
           protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/96 (19%), Positives = 42/96 (43%)

Query: 112 EFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKML 171
           E +V  ++  +    A +   +C+  +    + +   L+  V  A  + G +G   H + 
Sbjct: 472 EPIVRQHSDDIMSVSAAVLANLCVSYIMTFQNEEAEELMRKVEKAEEMKGNLGKQYHHLC 531

Query: 172 IIRAVESAVVVEVDNFEAVKNRSPNKLKSVARNKIY 207
           I+  V   +     N+E   +R  + L+S + N++Y
Sbjct: 532 IVNLVVGTLYCAKSNYEFGLSRIAHALESGSGNRLY 567


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.326    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,200,855
Number of Sequences: 52641
Number of extensions: 298630
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 15
length of query: 255
length of database: 24,830,863
effective HSP length: 83
effective length of query: 172
effective length of database: 20,461,660
effective search space: 3519405520
effective search space used: 3519405520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)