GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002093-TA|BGIBMGA002093-PA|IPR004853|Protein of unknown
function DUF250
         (255 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    71   2e-13
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    31   0.22 
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    29   0.50 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.87 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    28   1.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    28   1.5  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.6  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    26   6.1  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   8.1  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   8.1  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 2/162 (1%)

Query: 1   MIAAGLIMFTYKATQFNIEXXXXXXXXXXXXXXRWTFAQLLMQKAKLGLHNPVDMVFHVQ 60
           +I+AG+++     TQF +               RW   Q L+        NP   +F + 
Sbjct: 186 VISAGVVLMVATETQFVLSGFLLVMASSVLSGLRWALTQKLLLDHPW-TSNPFTSLFALT 244

Query: 61  PWMFLALIPFTAIFEGLDCIMFXXXXXXXXXXXXXXKVTVGATIAFAMEISEFLVVTYTS 120
           P MFL L+    IFEG                     + V  T+AF M  SEF ++  TS
Sbjct: 245 PLMFLFLLVAGLIFEG-PVRFIESPAWKEFGPFMSVVILVPGTLAFFMVASEFGLIQKTS 303

Query: 121 SLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGI 162
            +TLS+ GI KE+  ++ +     D L  IN+VGL + L GI
Sbjct: 304 IVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVITLCGI 345


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 12/120 (10%)

Query: 129 IFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKMLIIRAVESAVVVEVDNFE 188
           I KE  +L L + + G  L LI V+GL +CL     H    M     + +   + V   E
Sbjct: 372 ISKEPKLLGLYIFI-GVLLGLIGVIGLFICL-----HFSGAMNGFYRLLNRHGIPVQ--E 423

Query: 189 AVKNRSPNKLKS-VARNKIYHLNCVSFRSPNKDETDEPLLTEKSW---LSEDSDVDANVV 244
            + N  PNK ++ V +  +  L    F  P+    ++ L+ EK W    SE  D   NVV
Sbjct: 424 RIVNIGPNKPENRVTKEMLDTLPVRMFSGPHLANPNDELVYEKDWKLDKSESFDGQGNVV 483


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 151 NVVGLAVCLLGIIGHIVHKMLIIRAVESAVVVEVDNFEAVKNRSP 195
           N + L + L G    ++H + I ++V   + + +D+F+AV NR+P
Sbjct: 297 NAMVLTMTLGGSTNSVLHLIAIAKSV--GITLTLDDFQAVSNRTP 339


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 185 DNFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKDE 221
           D  EA K RS  K+KS++  + +  + VSF  P++DE
Sbjct: 412 DPIEAAK-RSAAKIKSISFERGFRFDNVSFAYPSRDE 447


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 123 TLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIG 164
           +LSI   F   C+L+L + V  ++  +  V+GL + +L I+G
Sbjct: 689 SLSITAYFLLACLLLLLIYVPLNRFRVNRVLGLLLFILYIVG 730


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 167 VHKMLIIRAVESAVVVEVD-NFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKD 220
           +H +    A++S   +E    +    N +PN + S+ + K Y+++ +++   N+D
Sbjct: 572 IHSVRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNED 626


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 227 LTEKSWLSEDSDVDANVVLYEVLQ 250
           L +  WL ED   DAN  LY  LQ
Sbjct: 324 LFQDDWLMEDCAPDANFTLYTPLQ 347


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 106 FAMEISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGH 165
           F + I+ F  +  TS +T  I+   + +   +LAV   G+ L    + G+ + L+G + +
Sbjct: 311 FYLNIATFTQIKVTSPVTYMISVSARSILQTLLAVAFLGETLYGNRIYGVILILVGTLLY 370

Query: 166 IVHK 169
            + K
Sbjct: 371 TLAK 374


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 116 VTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGII--GHIVHKMLII 173
           + Y+  + L  AG+   + +  LA    G+    +    L V +L +I  G    +ML I
Sbjct: 389 IPYSYQMMLFWAGLRGAVGV-ALAAGFEGENAQTLRATTLVVVVLTLIIFGGTTARMLEI 447

Query: 174 RAVESAVVVEVDN 186
             +E+ V  +VD+
Sbjct: 448 LHIETGVAADVDS 460


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 154 GLAVCLLGIIGHIVHKMLIIRAVESAVVVEVDNFEAVKNRSPNKLKSVARNKIYH 208
           G+ +C+ G    +   +  + A+   + V    FE +KNR   +LK     + YH
Sbjct: 588 GIILCISGFTDKLHVLLEKVVAMMRDLKVHPQRFEILKNRLEQELKDYDALEAYH 642


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 914,196
Number of Sequences: 5004
Number of extensions: 30962
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 10
length of query: 255
length of database: 2,362,478
effective HSP length: 71
effective length of query: 184
effective length of database: 2,007,194
effective search space: 369323696
effective search space used: 369323696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)