GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002093-TA|BGIBMGA002093-PA|IPR004853|Protein of unknown
function DUF250
         (255 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51201| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_47479| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17)                    29   2.8  
SB_29509| Best HMM Match : CBM_2 (HMM E-Value=0.4)                     29   4.9  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   4.9  
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_9142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_51201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 131 KEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIV 167
           KE+C L LA +  GD+++++N  GL +CL GI  H+V
Sbjct: 66  KEVCTLSLATEFGGDEMNIVNFCGLVLCLTGIAVHVV 102


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/65 (16%), Positives = 36/65 (55%)

Query: 98   VTVGATIAFAMEISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAV 157
            +T+   + F   +  F V++  + L+ S+A   K + ++ +++ +  + +++ N +G+ +
Sbjct: 1808 ITINGFLNFVQNMVAFTVLSLITPLSYSVATASKRILVISVSLFMLRNPVTIYNFLGMLM 1867

Query: 158  CLLGI 162
             + G+
Sbjct: 1868 AIFGV 1872


>SB_47479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/55 (23%), Positives = 29/55 (52%)

Query: 183 EVDNFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKDETDEPLLTEKSWLSEDS 237
           E+ +F+A K ++ N    + R ++   N + +   ++   D  LLT K  L++++
Sbjct: 41  ELQSFQAAKEKASNSFFGIMRERLKKANPMKYAGTDRLHLDRDLLTLKKALNKNA 95


>SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17)
          Length = 786

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 102 ATIAFAMEISEFLVVTYTSSLTLSIAGIFKEMC 134
           A I FA E+S FL   +     L++ G+++E C
Sbjct: 487 ACIDFANEVSPFLAKAFRKEKFLAVYGVYREKC 519


>SB_29509| Best HMM Match : CBM_2 (HMM E-Value=0.4)
          Length = 133

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 98  VTVGATIAFAMEISEFLVVTYTSSLTLSIA 127
           VTV AT++ ++ IS  + VT T S+++SI+
Sbjct: 44  VTVNATVSISISISITVTVTVTVSISISIS 73


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/79 (20%), Positives = 42/79 (53%)

Query: 104  IAFAMEISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGII 163
            ++  M IS+F+V+T T  + + I  I   + ++V+ + +    + + N+V +   ++ I+
Sbjct: 2103 VSCKMRISDFIVITVTIIIIIVIVIIIIIIIVIVIRITIIIAIIIVANIVIIISIIVIIV 2162

Query: 164  GHIVHKMLIIRAVESAVVV 182
              IV  ++I+  +   + +
Sbjct: 2163 IFIVIIIVIVLTITIIIAI 2181


>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 175 AVESAVVVEVDNFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKDETDEPLLTEKSWLS 234
           A +  V  E +  E  K+   + LK    N +  LN    +  N+D+ +EP  T   W+S
Sbjct: 373 AADDEVKEEAEEDETPKDYYLSDLKKQLTN-LLALNPADMKYKNEDDAEEPAATPVYWVS 431

Query: 235 E 235
           +
Sbjct: 432 K 432


>SB_9142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 129 IFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKMLIIRAVESAVVV 182
           + KE+ + V+ VK  G  + ++ V GL V ++ ++  +V KM++++ +   VVV
Sbjct: 75  VIKELVVKVVVVK--GLVVKVVVVKGLVVKVVVVMVVVVVKMVVVKVLVIKVVV 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,373,807
Number of Sequences: 59808
Number of extensions: 207384
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 9
length of query: 255
length of database: 16,821,457
effective HSP length: 81
effective length of query: 174
effective length of database: 11,977,009
effective search space: 2083999566
effective search space used: 2083999566
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)