Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002093-TA|BGIBMGA002093-PA|IPR004853|Protein of unknown
function DUF250
(255 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-12|AAT81181.1| 401|Caenorhabditis elegans Hypothetical... 119 2e-27
AC024791-11|AAF60659.1| 410|Caenorhabditis elegans Hypothetical... 119 2e-27
AC006804-4|ABO16464.1| 369|Caenorhabditis elegans Hypothetical ... 31 1.1
AC006804-3|AAF60757.2| 388|Caenorhabditis elegans Hypothetical ... 31 1.1
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival... 29 3.2
Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical pr... 28 7.5
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 28 7.5
AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein. 28 7.5
AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacti... 28 7.5
Z79639-4|CAB01917.2| 254|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AC024791-12|AAT81181.1| 401|Caenorhabditis elegans Hypothetical
protein Y47G6A.7b protein.
Length = 401
Score = 119 bits (287), Expect = 2e-27
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 2/171 (1%)
Query: 1 MIAAGLIMFTYKATQFNIEXXXXXXXXXXXXXXRWTFAQLLMQKAKLGLHNPVDMVFHVQ 60
+IAAGL +FT+K++Q ++ RWT +Q++MQ+ + +P+DMV HVQ
Sbjct: 208 LIAAGLFLFTWKSSQLDLTGLMLVELAAACTGIRWTVSQMVMQRDDSAVRHPLDMVAHVQ 267
Query: 61 PWMFLALIPFTAIFEG--LDCIMFXXXXXXXXXXXXXXKVTVGATIAFAMEISEFLVVTY 118
PWM + +IP +FEG ++ + G +AF ME+SE+L++
Sbjct: 268 PWMMIPIIPMIWLFEGAEINWNSVFSFKGHYDPWLVMGLIAGGGLLAFCMEMSEYLLLVN 327
Query: 119 TSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHK 169
TS +TL+I GI KE+ L+LA V+ D L+ +N+ GL +CL G++ H ++K
Sbjct: 328 TSGITLNIFGIVKEVATLLLAHIVNKDTLTELNICGLVLCLSGMLLHGMNK 378
>AC024791-11|AAF60659.1| 410|Caenorhabditis elegans Hypothetical
protein Y47G6A.7a protein.
Length = 410
Score = 119 bits (287), Expect = 2e-27
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 2/171 (1%)
Query: 1 MIAAGLIMFTYKATQFNIEXXXXXXXXXXXXXXRWTFAQLLMQKAKLGLHNPVDMVFHVQ 60
+IAAGL +FT+K++Q ++ RWT +Q++MQ+ + +P+DMV HVQ
Sbjct: 208 LIAAGLFLFTWKSSQLDLTGLMLVELAAACTGIRWTVSQMVMQRDDSAVRHPLDMVAHVQ 267
Query: 61 PWMFLALIPFTAIFEG--LDCIMFXXXXXXXXXXXXXXKVTVGATIAFAMEISEFLVVTY 118
PWM + +IP +FEG ++ + G +AF ME+SE+L++
Sbjct: 268 PWMMIPIIPMIWLFEGAEINWNSVFSFKGHYDPWLVMGLIAGGGLLAFCMEMSEYLLLVN 327
Query: 119 TSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHK 169
TS +TL+I GI KE+ L+LA V+ D L+ +N+ GL +CL G++ H ++K
Sbjct: 328 TSGITLNIFGIVKEVATLLLAHIVNKDTLTELNICGLVLCLSGMLLHGMNK 378
>AC006804-4|ABO16464.1| 369|Caenorhabditis elegans Hypothetical
protein Y53G8B.4b protein.
Length = 369
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 109 EISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVH 168
E F + + ++ G + +L+ ++ ++L+L+ +G A+CLLG ++H
Sbjct: 98 EACNFAAYAFAPASLVTPLGALSVIVTAILSSRMLNERLNLLGSIGCALCLLGSTVIVIH 157
>AC006804-3|AAF60757.2| 388|Caenorhabditis elegans Hypothetical
protein Y53G8B.4 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 109 EISEFLVVTYTSSLTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVH 168
E F + + ++ G + +L+ ++ ++L+L+ +G A+CLLG ++H
Sbjct: 117 EACNFAAYAFAPASLVTPLGALSVIVTAILSSRMLNERLNLLGSIGCALCLLGSTVIVIH 176
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 177 ESAVVVEVDNFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKDETDEPLLTEKSWLSED 236
+S ++ EV+N EA + N+L+ + + LN +S P +DE+ +L EK + E+
Sbjct: 274 KSELLDEVENVEA----TANELEKLDVSIDLELNILSSEQP-RDESRSVVLYEKKYYCEN 328
Query: 237 SDVD 240
+D+D
Sbjct: 329 ADLD 332
>AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival of
motor neuron)protein interactor protein 1, isoform a
protein.
Length = 254
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 186 NFEAVKNRSPNKLKSVARNKIYHLNCVSFRSPNKDETDEPLLTEKSWLSE 235
N + +SP+ A+ + L V ++ K ET PL+ + W E
Sbjct: 43 NVVRIAQKSPDSTSPEAKKQKQWLESVGYQEVKKIETPSPLIPSEEWRQE 92
>Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical
protein F07B10.1 protein.
Length = 424
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 102 ATIAFAMEISEFLVVTYTSSLTLSIAGI 129
A + F ++ S + VV Y+ ++ +S+AG+
Sbjct: 96 AFLVFLLQASSYFVVAYSKNIAMSLAGV 123
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 147 LSLINVVGLAVCLLGIIGHIVHKMLIIRAVES---AVVVEVDNFEAVKNRSPNKL 198
+S I +G ++CLLG++ + I+R + S V VD F+ + + + +L
Sbjct: 1 MSTIGYIGASICLLGVLSSLFSISHIVRDINSLRDEVEGRVDEFKVLADDTWQRL 55
>AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein.
Length = 424
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 102 ATIAFAMEISEFLVVTYTSSLTLSIAGI 129
A + F ++ S + VV Y+ ++ +S+AG+
Sbjct: 96 AFLVFLLQASSYFVVAYSKNIAMSLAGV 123
>AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacting
protein protein10, isoform a protein.
Length = 408
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 190 VKNRSPNKLKSVARNKIYHLNCVSFRSPNKDETDEPL 226
V++ +P L+S+ RN+ +R P+ D+ ++PL
Sbjct: 370 VRDSNPISLESINRNRPVTSRFTEYRDPDYDDYEDPL 406
>Z79639-4|CAB01917.2| 254|Caenorhabditis elegans Hypothetical
protein F54E4.3 protein.
Length = 254
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 122 LTLSIAGIFKEMCILVLAVKVSGDQLSLINVVGLAVCLLGIIGHIVHKMLIIRAVESAVV 181
+ L + + IL++ + + D++S N VGL C + I+ + ++ E+ V
Sbjct: 1 MNLQFLASIRILPILLIGLTSAQDEVSQCNYVGLVKCFINILDEWAWTLYELK--ENVVT 58
Query: 182 VEVDNFEAVK 191
+ D E +K
Sbjct: 59 ITQDQCEHLK 68
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 147 LSLINVVGLAVCLLGI------IGHIVHKMLIIRAVESAVVVEVDNFEAVKNRSPNKL 198
+S + +G VCLLG+ IGHIV I + S V VD F+ + + + ++L
Sbjct: 1 MSTLGYIGAGVCLLGVFSALCSIGHIVQD---INNLRSEVEGRVDEFKVLADDTWDRL 55
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.138 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,845,954
Number of Sequences: 27539
Number of extensions: 163087
Number of successful extensions: 577
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 12
length of query: 255
length of database: 12,573,161
effective HSP length: 80
effective length of query: 175
effective length of database: 10,370,041
effective search space: 1814757175
effective search space used: 1814757175
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)
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