GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002092-TA|BGIBMGA002092-PA|undefined
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    36   0.005
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   4.4  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   5.8  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 114 LSSGIDVGFSNWGLELVTISLYTMTKST 141
           L +G+D+G SN  LE +T+S YTM +S+
Sbjct: 132 LVTGLDIGLSNASLETITLSFYTMCRSS 159


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 64  FKYPLTVVMYHLVVKWLLSVLVRSV-LYCITK-TPQLVLPLG-----TSIRSVAP 111
           FK  LTV  + + + WLL  +   V L  I    PQ+V  +G     T++ +VAP
Sbjct: 277 FKQSLTVFKHPIAILWLLEEMALGVPLNSINNWLPQIVAAMGFSSVNTNLMTVAP 331


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 114 LSSGIDVGFSNWGLELVTISL 134
           LS GI  GF  +GLE VT S+
Sbjct: 236 LSCGIPAGFIAYGLEFVTKSI 256


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,779
Number of Sequences: 5004
Number of extensions: 24448
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 3
length of query: 200
length of database: 2,362,478
effective HSP length: 69
effective length of query: 131
effective length of database: 2,017,202
effective search space: 264253462
effective search space used: 264253462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)