Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002092-TA|BGIBMGA002092-PA|undefined
(200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0382 + 2742946-2743256,2743353-2743522,2743604-2743689,274... 34 0.068
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 33 0.21
01_06_0711 + 31388369-31388799,31388907-31389079,31389852-313899... 32 0.27
06_02_0039 - 10873398-10873680,10874505-10874671,10874807-108749... 29 2.6
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 29 2.6
12_01_0233 + 1750772-1752058 28 4.5
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 28 4.5
>06_01_0382 +
2742946-2743256,2743353-2743522,2743604-2743689,
2743806-2743855,2744061-2744128,2744967-2745067,
2745994-2746080,2746636-2746730,2747145-2747274
Length = 365
Score = 34.3 bits (75), Expect = 0.068
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 54 TFYQRWLLRDF--KYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTS--IRSV 109
T Y + LL D K+P ++M + V L + L + ++ TK + + +G V
Sbjct: 103 TLYNKTLLGDKLGKFPAPLLM-NTVHFALQAGLSKIIMLFQTKGVENAVEMGWKDYFMRV 161
Query: 110 APTGLSSGIDVGFSNWGLELVTISLYTMTKSTT 142
PT L + +D+ SN L ++++ TM KS +
Sbjct: 162 VPTALGTALDINLSNASLVFISVTFATMCKSAS 194
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 71 VMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLSSGIDVGFSNWGLELV 130
V+ ++++ L +V + + + +VL SI ++ P GL+ GI GF L L+
Sbjct: 483 VVVNILMNALYQTIVMGHVITLKEAIVVVLMNNFSIAAITPVGLAIGISSGFGVLALTLI 542
Query: 131 TISLYTMTKSTT 142
L+ K +T
Sbjct: 543 AAILFKRWKRST 554
>01_06_0711 +
31388369-31388799,31388907-31389079,31389852-31389937,
31390041-31390090,31390598-31390665,31391490-31391674,
31391884-31391970,31392075-31392169,31392509-31392635
Length = 433
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 VAPTGLSSGIDVGFSNWGLELVTISLYTMTKS 140
V PT L++ +D+ SN L +T++ TM KS
Sbjct: 202 VVPTALATALDINLSNISLVFITVTFATMCKS 233
>06_02_0039 -
10873398-10873680,10874505-10874671,10874807-10874900,
10874988-10875196,10875283-10875434,10876673-10876763
Length = 331
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 64 FKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLSSGIDVGFS 123
F +P+ + + H + W+L ++++ Y + P T S+ G G +
Sbjct: 88 FNFPVALSLIHYIAAWVLMAVLKA-FYLLPIAPP---SKSTPFSSLFALGAVMSFSTGLA 143
Query: 124 NWGLELVTISLYTMTK 139
N L+ ++ Y M K
Sbjct: 144 NISLKHNSVGFYQMAK 159
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 58 RWLLR--DFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLS 115
+W+ + DFK+PLTV H + S+ ++ + P + + R + P
Sbjct: 37 KWIFQKLDFKFPLTVSCVHFICS---SIGAYIAIHVLKAKPLIQVEPEDRWRRIFPMSFV 93
Query: 116 SGIDVGFSNWGLELVTISLYTMTKSTT 142
I++ N L + +S KS T
Sbjct: 94 FCINIVLGNVSLRYIPVSFMQTIKSFT 120
>12_01_0233 + 1750772-1752058
Length = 428
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/78 (21%), Positives = 35/78 (44%)
Query: 63 DFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLSSGIDVGF 122
++ +P+++ M H+ L+V++ VL + + SV P G + + F
Sbjct: 119 NWPFPISLTMIHMAFCASLAVVLVRVLRVVAVPASPPMTPSLYAASVVPIGALYALSLWF 178
Query: 123 SNWGLELVTISLYTMTKS 140
SN +++S M K+
Sbjct: 179 SNSAYIYLSVSFIQMLKA 196
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/78 (21%), Positives = 35/78 (44%)
Query: 63 DFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLSSGIDVGF 122
++ +P+++ M H+ L+V++ VL + + SV P G + + F
Sbjct: 79 NWPFPISLTMIHMAFCASLAVVLVRVLRVVAVPASPPMTPSLYAASVVPIGALYALSLWF 138
Query: 123 SNWGLELVTISLYTMTKS 140
SN +++S M K+
Sbjct: 139 SNSAYIYLSVSFIQMLKA 156
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,853,167
Number of Sequences: 37544
Number of extensions: 142537
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 7
length of query: 200
length of database: 14,793,348
effective HSP length: 79
effective length of query: 121
effective length of database: 11,827,372
effective search space: 1431112012
effective search space used: 1431112012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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