GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002092-TA|BGIBMGA002092-PA|undefined
         (200 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical...    88   3e-18
AC024791-11|AAF60659.1|  410|Caenorhabditis elegans Hypothetical...    88   3e-18
Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical p...    27   6.9  
AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose tr...    27   6.9  

>AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47G6A.7b protein.
          Length = 401

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 37/89 (41%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 54  TFYQRWLLRDFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTG 113
           TFYQ+W ++++K PL VV  H V+K+L ++ +R +  C+ +T +  +     +R +AP G
Sbjct: 95  TFYQKWFIKNYKLPLLVVSGHYVLKYLFAITIRFIYECL-RTRRTRVSFRDQLRWLAPIG 153

Query: 114 LSSGIDVGFSNWGLELVTISLYTMTKSTT 142
           + + +D+G SNW LE VT+SLYTM KS++
Sbjct: 154 ICASMDIGLSNWALEYVTVSLYTMAKSSS 182


>AC024791-11|AAF60659.1|  410|Caenorhabditis elegans Hypothetical
           protein Y47G6A.7a protein.
          Length = 410

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 37/89 (41%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 54  TFYQRWLLRDFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTG 113
           TFYQ+W ++++K PL VV  H V+K+L ++ +R +  C+ +T +  +     +R +AP G
Sbjct: 95  TFYQKWFIKNYKLPLLVVSGHYVLKYLFAITIRFIYECL-RTRRTRVSFRDQLRWLAPIG 153

Query: 114 LSSGIDVGFSNWGLELVTISLYTMTKSTT 142
           + + +D+G SNW LE VT+SLYTM KS++
Sbjct: 154 ICASMDIGLSNWALEYVTVSLYTMAKSSS 182


>Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical
           protein C50F4.14 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 55  FYQRWLLRDFKY--PLTVVMYHLVVKWLLSVLVR--SVLYCITKTPQLVLPLGTSIRSVA 110
           F  ++LL   +   PL +  Y  +V   L + +   S  Y + K P + +    S R V 
Sbjct: 46  FLNKYLLSSVQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPSMPIDAKIS-REVL 104

Query: 111 PTGLSSGIDVGFSNWGLELVTISLYTMTKSTT 142
           P  +     + F+N  L+ V +S Y + +S T
Sbjct: 105 PLSVVFVAMISFNNLCLKYVGVSFYYVGRSLT 136


>AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose
           transporter protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 55  FYQRWLLRDFKY--PLTVVMYHLVVKWLLSVLVR--SVLYCITKTPQLVLPLGTSIRSVA 110
           F  ++LL   +   PL +  Y  +V   L + +   S  Y + K P + +    S R V 
Sbjct: 46  FLNKYLLSSVQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPSMPIDAKIS-REVL 104

Query: 111 PTGLSSGIDVGFSNWGLELVTISLYTMTKSTT 142
           P  +     + F+N  L+ V +S Y + +S T
Sbjct: 105 PLSVVFVAMISFNNLCLKYVGVSFYYVGRSLT 136


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,245,491
Number of Sequences: 27539
Number of extensions: 128965
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 4
length of query: 200
length of database: 12,573,161
effective HSP length: 78
effective length of query: 122
effective length of database: 10,425,119
effective search space: 1271864518
effective search space used: 1271864518
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)