GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002089-TA|BGIBMGA002089-PA|undefined
         (181 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 147 KNNKDKEQAPQQPTSVPPMVPPYIHTMFSH 176
           KNN+      Q+P S     PP+++    H
Sbjct: 261 KNNRASPYPMQRPKSASLSPPPHVYNPPDH 290



 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 153 EQAPQQPTSVPPMVPPYIH 171
           E  P     VPP  P YIH
Sbjct: 94  EWVPGGKAEVPPSNPIYIH 112


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,927
Number of Sequences: 317
Number of extensions: 1511
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 181
length of database: 114,650
effective HSP length: 53
effective length of query: 128
effective length of database: 97,849
effective search space: 12524672
effective search space used: 12524672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)