Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002089-TA|BGIBMGA002089-PA|undefined
(181 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 33 0.10
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 29 2.2
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 28 3.8
03_02_0945 - 12614658-12614909,12615200-12615325,12616684-126168... 28 3.8
01_05_0762 + 24990915-24990970,24991076-24991592,24991676-249917... 28 3.8
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 28 5.0
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 28 5.0
02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93... 27 6.6
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 33.5 bits (73), Expect = 0.10
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 33 LSKVYVRVSAATGVSER-TVLNIAREARLVEQGLLDPETLKKSPKKRVRTKGKIEVD-EY 90
L++ ++ +AA E+ VL A +R+ ++ P ++KS ++ + V
Sbjct: 427 LAREFLLDAAAVIFKEQIVVLKPAASSRVDIGNIVFPVKVEKSLREATAQQNAHSVFVSL 486
Query: 91 DLQVIRRKIHEFYAFKKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNK 150
L+++ ++H KE+ T+ K ++L+EE K E R+ R+ + +K + +
Sbjct: 487 ALKLLEERVH---VACKEIITLEKQTKLLEEEEKEKREEEE-RRERRRTKEREKKLRRKE 542
Query: 151 DKEQAPQQPTSVPPMVPPYIHTMFS 175
++ ++ +P + PYI T S
Sbjct: 543 RLKEKEKEKEKIPVQLKPYIGTSSS 567
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 77 KRVRTKGKIEVDEYDLQVI--RRKIHEFYAFKKEVPTINKLLQILKEEIN-FKGSRETLR 133
K + + + + + DLQ++ ++K KE ++ + L+EEI+ K + L+
Sbjct: 580 KTLEAQYMLVIQDLDLQILDLKKKQENQVQLLKEKQKSDEAAKKLQEEIHSIKAQKVQLQ 639
Query: 134 KILRKNGFQFRKTKNNKDKE 153
+++ QFR+ K ++KE
Sbjct: 640 HKIKQEAEQFRQWKATREKE 659
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 86 EVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKEEINFKGSRETLRKILR 137
+V E D+Q H+F+ + ++P L ++L +I KG+ E R LR
Sbjct: 193 KVREVDVQEDGCNKHDFFRIRVDLPVNRPLKRMLAIKIKVKGAEEIRRFNLR 244
>03_02_0945 -
12614658-12614909,12615200-12615325,12616684-12616872,
12617059-12617169,12617629-12617744,12617861-12617966
Length = 299
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 65 LLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKEEIN 124
+L P P V+ KG + D ++ EF ++ VP + + L IL+EEIN
Sbjct: 118 ILTPLPRMNIPFDIVKGKGSVIFDPLRTAAAVNEVREFVP-EEWVPYVGQALNILREEIN 176
>01_05_0762 +
24990915-24990970,24991076-24991592,24991676-24991753,
24993678-24993743,24994819-24994943,24995414-24995612,
24995909-24996137,24996259-24996425,24996526-24996735,
24997245-24997355,24997436-24997612,24997826-24998284,
24998676-24998966
Length = 894
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 76 KKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQI 118
++ +R GKI + +YD+ I ++ +F KE T L+ +
Sbjct: 440 RESIRAVGKIALQQYDVNAIVDRLLQFLEMDKEYVTAETLVLV 482
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 6 TSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIAREARLVEQGL 65
T E + LK++ E +R+Q + SK+ + AA + + ++A ++ +
Sbjct: 203 TVESKLYTLKIESLQSENERLQAQLTESSKLASELEAARMKCKLLKKKLRQDAEQAKERI 262
Query: 66 LDPETLKKSPK-KRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQ 117
+ + S + K + T+GK +++ K+ E +E+ +N LQ
Sbjct: 263 ASLQEMADSWQCKEIITEGKFSA---EVEEKLSKLEELENEARELRVVNSRLQ 312
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 131 TLRKILRKNGFQFRKTKNNKDKEQAPQQPTS---VPPMVPPY 169
++ +++R+ GF K+N + E A TS PP +PP+
Sbjct: 200 SVSRVMREAGFSSSTVKSNLEGESALMMSTSSSPPPPAIPPH 241
>02_01_0128 -
930461-930828,931223-931369,931567-931704,931888-931975,
932068-932157,932249-932315,933411-933535,934079-934213
Length = 385
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 107 KEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPTSVP 163
+ + IN+ ++ +EE + E K L F + ++ D E APQ P S P
Sbjct: 248 ESISYINRPFEVRREEGRSYITLEHALKTLLPEFFSSKASRIPDDSETAPQAPDSAP 304
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,833,050
Number of Sequences: 37544
Number of extensions: 186022
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 8
length of query: 181
length of database: 14,793,348
effective HSP length: 78
effective length of query: 103
effective length of database: 11,864,916
effective search space: 1222086348
effective search space used: 1222086348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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