Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002089-TA|BGIBMGA002089-PA|undefined
(181 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 38 0.006
SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 30 1.3
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1) 28 3.9
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 28 5.2
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 28 5.2
SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_9669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059) 27 6.8
SB_56427| Best HMM Match : Gly_radical (HMM E-Value=6.5) 27 6.8
SB_41489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 9.0
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 27 9.0
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 27 9.0
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16) 27 9.0
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 38.3 bits (85), Expect = 0.004
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 3/162 (1%)
Query: 6 TSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIAREARLVEQGL 65
TS+++ + K KE + + Q K Y + V+E + E L+E
Sbjct: 1605 TSDLQTKLRKAKEKIKQGSARQEEQTKKYKAY-QEKREKDVAELREKVQSLEKELMETSE 1663
Query: 66 LDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKE-VPTINKLLQILKEEIN 124
E L+ S K+ K K+E E + Q I +KI E A K+E + T K + K +I+
Sbjct: 1664 KLREDLRGSEKREEELKLKLEAGESNNQAIDKKIAELSAEKQEIIQTSAKAEEAFKIQIH 1723
Query: 125 -FKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPTSVPPM 165
K ET + ++ +NK KE ++ T++ M
Sbjct: 1724 ELKSQFETTNQTYENELSAAKQELDNKIKELESEKETALEKM 1765
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 37.5 bits (83), Expect = 0.006
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 6 TSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSE--RTVLN----IARE-A 58
T ++R++ ++ MD+ + ++ +S V+E + ++N I RE A
Sbjct: 4053 TEKIRQMCNQLNGLMDQRRNHELEESLMSHKRSNEQLNNQVNEQRKQIINLQDQIKRERA 4112
Query: 59 RLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKK-EVPTINKLLQ 117
L + LL+ TLK+ + ++T G + ++ +LQ ++ Y K+ E I+ LQ
Sbjct: 4113 ELANRQLLEQRTLKEQLEVHIQTIGILVGEKQELQSTVSQLQRKYQTKESENSEISGRLQ 4172
Query: 118 ILKEEI-NFKGSRETLRKILRKNGFQFRKTKNNKDKEQ 154
++++I + + +L L K F T+ +DK Q
Sbjct: 4173 AVRQKIVELERNNASLSASLEKYQSDFNHTRQERDKYQ 4210
>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 31.1 bits (67), Expect = 0.55
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 103 YAFKKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPTSV 162
Y K P+ N+ + + +I FKG + T R K + RK KDKE+ + P
Sbjct: 502 YLLSKLSPS-NRGAEKVLIDIFFKGKKTTKRVPTTKVVTENRKAAAKKDKEKPVRLPRRF 560
Query: 163 PPMVPPYIHTMFSHKS 178
M P ++ + HK+
Sbjct: 561 IRMKPLFVRLLKRHKN 576
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 69 ETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKEEI 123
E LK+ ++ ++ KGK + D+ D +R ++ + K E + + L++ EE+
Sbjct: 649 EKLKRKLRQLLKKKGKTDEDDLDADAVREELEQVRKDKIESEKVAQELRMELEEV 703
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.5 bits (63), Expect = 1.7
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 1 MPKNITSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIARE--- 57
M N EV+ ++LK+K DE + + K + +++ + N+ E
Sbjct: 517 MYNNNQEEVKRLVLKLKSSADEIVSLTGMHNVVKKEKESLETQNTLADEKIRNLESEVKR 576
Query: 58 ----ARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTIN 113
A +E L E KK+P+K +TK + + +++ + + E + +E ++
Sbjct: 577 WRTTAEELEAKLRSAEEEKKTPRKE-KTKVVLTTTDENVRELVKLRQESENYARETTSLR 635
Query: 114 KLLQ 117
KLL+
Sbjct: 636 KLLE 639
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 119 LKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPT 160
+KEE++ KG+ K K KTKNNKDK + + T
Sbjct: 378 MKEELHSKGTNTVKNKTKNKKD----KTKNNKDKTKENKDKT 415
>SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)
Length = 519
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 130 ETLRKI--LRKNGFQFRKTKNNKDKEQAPQQPTSVPPMVPPYIHTMFSHKSIQ 180
ETL+ + L K + NN ++E AP +PP++ P I+T K ++
Sbjct: 414 ETLKHLEELHKRACENIDENNNDEEEPAPALSEILPPIILPRIYTQQRAKEMK 466
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.3 bits (60), Expect = 3.9
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 3 KNITSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIAREARLVE 62
+ +TS+V+ + + E ++ M+ I L K YVR+ E T LN E E
Sbjct: 2350 ERLTSQVQRLERDLDEAAAQKSDMEDRIATLEKRYVRMQ-----HEVTGLNDDNERLETE 2404
Query: 63 QGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEV 109
+ E ++ K R + K+E+ E +L + RK ++E+
Sbjct: 2405 LATKETELIQCEEKVR-DLQEKLELSEQNLNQLLRKAEALPKIEEEL 2450
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 154 QAPQQPTSVPPMVPPYIHTMFSHKSIQ 180
+ P QP SVPP+ P +H S I+
Sbjct: 1202 EGPAQPASVPPIAAPPLHEELSVSKIK 1228
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 3 KNITSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIAREARLVE 62
++++S ++ K KE DE+ R+ + I+ LS+ YV T ++E E RL +
Sbjct: 839 RDLSSAKSALLEKAKELEDEKGRI-LDIVELSRKYVS-ELETSLAEEKTQKEELEKRLAD 896
Query: 63 QG 64
G
Sbjct: 897 SG 898
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 2 PKNITSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIAREARLV 61
P+ IT +V +KV E + Y + GV E ++ R+
Sbjct: 18 PEEITCKVENGKIKVSGLQRHESEEGFDSKEFRRCY---NLPEGVDESSI-----STRIA 69
Query: 62 EQGLLDPETLKKSPKKRVRTKGKIEVDE 89
E G+L E LKKSP K D+
Sbjct: 70 EDGMLHVEALKKSPPATTENKAPATKDD 97
>SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 138 KNGFQFRKTKNNKDKEQAPQQPTSVPPMVPPYIHTM 173
++ +F T +E A QP VP M+P +HT+
Sbjct: 329 QSNLKFLSTLKGPCEELAQAQPKDVPAMLPRILHTI 364
>SB_9669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 27.9 bits (59), Expect = 5.2
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 72 KKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKEEINFKGSRET 131
K+ + R T E+ L+ R KI++F F+ + + L Q +K+ K S+ET
Sbjct: 193 KEGKRNRFMTVTYREIAGSPLETAR-KIYDFAGFQMD----DALAQWIKKST--KPSKET 245
Query: 132 LRKILRKNGFQFRKTKNNKDKEQ 154
LRK L + R N D+ Q
Sbjct: 246 LRKELEQPYSHVRNATGNADRWQ 268
>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 148 NNKDKEQAPQQPTSVPPMVPPYIHTMFSHKSIQ 180
+ KDK P P+S PP +P T+ S S++
Sbjct: 398 SQKDKAYLPAPPSSPPPPIPTATVTITSSSSME 430
>SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059)
Length = 657
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 39 RVSAATGVSERTVLNIAREARLVEQGLLDPETLK-KSPKKRVRTKGKIEVDEY 90
++S TGVSE L I+R+AR V L P L +S V G EVDEY
Sbjct: 365 KLSERTGVSE---LTISRKAREVATVLGTPGVLVFESVVNAVGRGGVAEVDEY 414
>SB_56427| Best HMM Match : Gly_radical (HMM E-Value=6.5)
Length = 133
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 101 EFYAFKKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPT 160
+FY KK VP K + ++ KT+ K KE P +
Sbjct: 32 DFYTNKKAVPVEGKGASATTPITGSHQALTAMQSEEEPGASMGHKTERKKAKELKPMKKA 91
Query: 161 SVPPM-VPPYIHTM 173
+ P+ PP+++TM
Sbjct: 92 GLTPLRPPPHLNTM 105
>SB_41489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 57 EARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLL 116
EA++ +Q L+ E +K+ ++ E E + + F FKKE+ + K +
Sbjct: 113 EAKMAQQNLVFNEMKEKTLMEKQEVALYTEKFEEFQSTLTKSNEMFVTFKKEMDKMTKTI 172
Query: 117 QILKEE-----INFKGSRETLRKIL 136
+ L++E F+G+ +L ++L
Sbjct: 173 KKLEKENKTWKSRFEGTNRSLLEML 197
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.1 bits (57), Expect = 9.0
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 40 VSAATGVSERTVLN-IAREARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRK 98
VSA V E+ + I R+ + VE+ + P+T K + ++ K K V+E +L V K
Sbjct: 6034 VSAEKAVEEKPLEKPITRKEKKVEE--VKPKTEKPTEREAKPLKEKPLVEEKELTVSAEK 6091
Query: 99 IHEFYAFKKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQ 158
E +K + K ++ +K + RE K L K K K+ ++
Sbjct: 6092 AVEEKPLEKPITREEKKVEEVKPKKEKPTEREA--KPLDKKPLVEEKELPVSAKKAVEEK 6149
Query: 159 PTSVP 163
P P
Sbjct: 6150 PLGKP 6154
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 74 SPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKE-EINFKGSRETL 132
SP ++T +D+ Q + +HE+ +KE + + LQ ++ + E++
Sbjct: 963 SPAAALQTVSA-SIDDVIKQTPQISVHEYQLLQKEAGQLRRDLQAARQSRMKAPPVAESI 1021
Query: 133 RKILRKNGFQFRKTKNNKDK 152
++I+R + K+ K+K
Sbjct: 1022 KRIIRGEPYSLELYKSLKEK 1041
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 148 NNKDKEQAPQQPTSVPPMVPP 168
NNK++ Q P+ P PP PP
Sbjct: 1300 NNKEQIQPPESPPPPPPPPPP 1320
>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
Length = 807
Score = 27.1 bits (57), Expect = 9.0
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 72 KKSPKKRVRTKGKIEVDEYDL------QVIRRKIHEF-YAFKKEVPTINKLLQILKEEIN 124
K S K+V K ++ + ++D +VI + H+ YA K +K+ LKE
Sbjct: 129 KMSEDKKVAEKRELFIWKFDSDVSLLKEVIAEEPHKHPYASKDRGKKCDKIALNLKENHG 188
Query: 125 FKGSRETLRKILRKNGFQFRKTKNNKDKEQA 155
FK ++ ++RK + F K K K+K +
Sbjct: 189 FKVTQRSVRKRFKSLREDFLK-KEKKEKRDS 218
>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 100 HEFYAFKKEVPTINKLLQILKEEINFKGSR---ETLRKILRK 138
+ FY F+++ + KL Q+ EE+N K R E++ K++ +
Sbjct: 83 NHFYDFERDAQLLKKL-QVFLEEVNGKAMRRWVESINKVIER 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,737,229
Number of Sequences: 59808
Number of extensions: 226973
Number of successful extensions: 880
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 28
length of query: 181
length of database: 16,821,457
effective HSP length: 78
effective length of query: 103
effective length of database: 12,156,433
effective search space: 1252112599
effective search space used: 1252112599
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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