GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002089-TA|BGIBMGA002089-PA|undefined
         (181 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   0.75 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.3  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 85  IEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKEE--INFKGSRETLRKILRKNGFQ 142
           I+++  +LQ I+ +IH     K  + T+     I+  E  I  + + E  + I  +   +
Sbjct: 110 IQINATELQKIKLEIHRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSKPIFEREEIK 169

Query: 143 FRKTKNNKDKE 153
              TK NK +E
Sbjct: 170 NVLTKINKIEE 180


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 140 GFQFRKTKNNKDKEQAPQQPTSVPPMVPPYIHT 172
           GF+  K++++    QA +    +P  V   +HT
Sbjct: 58  GFEIEKSEDDSFNNQADKSEKRIPLYVCRVLHT 90


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 52  LNIAREARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRK 98
           LN+A + R      +  ++L    K+ V   G +EVD  D +V+  K
Sbjct: 453 LNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSLEVDVIDGRVLSVK 499


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 130 ETLRKILRKNGFQFRKTKNN 149
           E++ KI+ KNG  F    NN
Sbjct: 306 ESIAKIMSKNGVLFFGLMNN 325


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 64 GLLDPETLKKSP 75
          G L PE LKK P
Sbjct: 77 GYLSPEVLKKEP 88


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 145 KTKNNKDKEQAPQQPTSVPPMV 166
           K K NK+ E     P   PP +
Sbjct: 212 KKKKNKEDEDDGATPRKAPPQL 233


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 74  SPKKRVRTKGKIEV 87
           SP  RV+ +G+IEV
Sbjct: 571 SPSYRVKERGEIEV 584


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,461
Number of Sequences: 429
Number of extensions: 2396
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 181
length of database: 140,377
effective HSP length: 54
effective length of query: 127
effective length of database: 117,211
effective search space: 14885797
effective search space used: 14885797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)