Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002089-TA|BGIBMGA002089-PA|undefined
(181 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom... 30 1.0
At3g04990.1 68416.m00542 hypothetical protein 29 2.4
At1g11510.1 68414.m01322 DNA-binding storekeeper protein-related... 29 2.4
At1g09950.1 68414.m01121 transcription factor-related low simila... 29 2.4
At5g23770.1 68418.m02791 agenet domain-containing protein contai... 28 4.2
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9... 28 4.2
At4g17220.1 68417.m02590 expressed protein 28 4.2
At3g01450.1 68416.m00069 expressed protein 27 5.6
At5g53070.1 68418.m06593 ribosomal protein L9 family protein con... 27 7.4
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 27 7.4
At3g48500.1 68416.m05294 expressed protein 27 7.4
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 27 7.4
At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containi... 27 7.4
At2g41960.1 68415.m05191 expressed protein 27 7.4
At1g76220.1 68414.m08851 hypothetical protein contains Pfam prof... 27 7.4
At5g60030.1 68418.m07527 expressed protein 27 9.7
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 27 9.7
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 27 9.7
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 9.7
>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
domain-containing protein similar to PLU-1 protein
(GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
musculus]; similar to Retinoblastoma-binding protein 2
(RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
PF02373: jmjC domain
Length = 1116
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 63 QGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQ 117
+G+LD +KKS R ++ K+ L+ + +HEF +F VP +N L Q
Sbjct: 569 EGILD--LVKKSESARDKSN-KVLTGSLSLENVEELLHEFDSFSINVPELNILRQ 620
>At3g04990.1 68416.m00542 hypothetical protein
Length = 227
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 80 RTKGKIEVDEYDLQVI----RRKIHEFYAFKKEVPTINKLLQILKEEINFKGSRETLR 133
++ ++++ E +LQ++ +K H F A K EV + KL++ EE+ K + T++
Sbjct: 34 KSSRELDLKEKELQILSSDLEQKSHAFEAEKSEVGDLKKLVEECTEELRSKRNLLTVK 91
>At1g11510.1 68414.m01322 DNA-binding storekeeper protein-related
similar to storekeeper protein GI:14268476 [Solanum
tuberosum]
Length = 352
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 109 VPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPTSVPP 164
V NK+ +++K+ I+F S+ L + LR +K +NN K + +PT V P
Sbjct: 163 VSNTNKVYELVKKSISFDVSKNQLMEKLRA---LKKKYENNLGKAKDGVEPTFVKP 215
>At1g09950.1 68414.m01121 transcription factor-related low
similarity to tumor-related protein [Nicotiana glauca x
Nicotiana langsdorffii] GI:688423, SP|P23923
Transcription factor HBP-1b {Triticum aestivum}
Length = 230
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 39 RVSAATGVSERTVLNIAREARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQ 93
R+S+ + R + R+ LV+Q + DP + + +RV G ++ +E DL+
Sbjct: 119 RISSLKSETRRKEREVMRDFALVQQSVADPPVMLAA--RRVGAVGMVDGEETDLE 171
>At5g23770.1 68418.m02791 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 438
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 113 NKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPTSV 162
N ++ K N K + + K+L Q +KT+ KD E+ + SV
Sbjct: 338 NSFAELEKHGFNVKAPQSRINKLLSLRDRQSKKTEELKDAEKVTAEKESV 387
>At5g11490.1 68418.m01341 adaptin family protein similar to
SP|Q9WV76 Adapter-related protein complex 4 beta 1
subunit (Beta subunit of AP- 4) {Mus musculus},
beta-adaptin Drosophila 1 {Drosophila melanogaster}
GI:434902; contains Pfam profile: PF01602 Adaptin N
terminal region
Length = 841
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 76 KKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQI 118
++ +R GKI + +YD+ I ++ +F +K+ T L+ +
Sbjct: 391 RESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAETLVLV 433
>At4g17220.1 68417.m02590 expressed protein
Length = 513
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 13 ILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLN-IAREARLVEQGLLDPETL 71
++ VK++++E + + + L K + VS T +E + + + +E GL P T
Sbjct: 272 VMPVKQWLEERRILHGEMQKL-KDKLAVSERTAKAESQLKERLKLRLKTIEDGLKGPNTF 330
Query: 72 KKSPKKRVRTKGKI 85
SP + GKI
Sbjct: 331 FVSPTTKTEKSGKI 344
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 112 INKLLQILKEEIN--FKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQPT 160
I KL+Q +++ SRE R +L + ++KT N + KE+ P+ T
Sbjct: 241 IEKLVQAASSQLSDQLPESREAARAVLLELQTVYKKTTNVEPKEEHPEPVT 291
>At5g53070.1 68418.m06593 ribosomal protein L9 family protein
contains similarity to ribosomal protein L9
Length = 221
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 87 VDEYDLQVI-RRKIHEFYAFKKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRK 145
+D+Y + +RK++ K+EV ++K ++ +E R ++ + K
Sbjct: 83 IDKYAYLIREQRKMYNHEEVKEEVKVVHKTSEVQTKEYEKAAKRLANANLVLRKLVDKEK 142
Query: 146 TKNNKDKEQAPQQPTSV 162
KN K+ P T +
Sbjct: 143 FKNRSSKDDKPDVQTPI 159
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 106 KKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKEQAPQQ 158
KKE+ TI ++ ++ + K + ++KI+ K ++K K K+KE+ ++
Sbjct: 252 KKEMQTIRDVMFKTEKSKSAKLKSKIVKKIVPKKLRSYKKKKKMKNKEKEEEE 304
>At3g48500.1 68416.m05294 expressed protein
Length = 668
Score = 27.1 bits (57), Expect = 7.4
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 15 KVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERT-VLNIAREARLVEQG----LLDPE 69
K+ E D+E + I + Y + + V +T V + EA L E+ L+
Sbjct: 429 KLSELSDDEDFDEQKDIEYGEAYYKKTKLPKVILKTSVKELDLEAALTERQHHNKLMMEA 488
Query: 70 TLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKEEINFK 126
+ K + + IE+DEYD RR + E A +++ + L L+E +K
Sbjct: 489 KARGEGYKIDKLRRNIEMDEYDFLHWRRSLEEREALLRDISSRQALGLPLEEPGRYK 545
>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 254
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 56 REARLVEQGLLDPETLKKSPKKRVRTKGKI 85
R AR+ E+ P K+ PKKR RTK +
Sbjct: 77 RSARISEKTKATPSPDKEPPKKRGRTKSPV 106
>At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 641
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 69 ETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKE 121
E L+ S K+R KG E L IRRK+H F A + P + +LKE
Sbjct: 571 EKLRNSVKQRGIKKGLAE----SLIEIRRKVHRFVADDELHPEKEPVYGLLKE 619
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 107 KEVPTINKLLQILKEEINFKGSRETL--RKILRKNGFQFRKTKNNKDKEQAPQQ 158
KE+ T+ K ++L+EE K E RK +++ + R+ + K+KE+ +Q
Sbjct: 489 KEIVTLEKQNKLLEEEEKEKREEEERKERKRIKEREKKLRRKERLKEKEREKEQ 542
>At1g76220.1 68414.m08851 hypothetical protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 256
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 60 LVEQGLLDPETLKKSPKK----RVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKL 115
L+E D KK ++ R+ K EVD +L+ +R HE +KE+ + K
Sbjct: 183 LIEVVTKDQRDQKKGSRRGIVSRIFNKKNQEVDVDELKKLRETEHEIEETEKELECVYK- 241
Query: 116 LQILKEEINF 125
++LK ++F
Sbjct: 242 -KLLKTRVSF 250
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 26.6 bits (56), Expect = 9.7
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 67 DPETLKKSPKKRVRTKGKIEV-DEYDLQVIRRK------IHEFYAFKKEVPTINKL--LQ 117
D ET K+ K + V DE+D + IR + + Y +++ + K
Sbjct: 68 DRETKSTETKQSSDAKSERNVIDEFDGRKIRYRNSEAVSVESVYGRERDEKKMKKSKDAD 127
Query: 118 ILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKE 153
++ E++N K E + R+ + +K KNNKD++
Sbjct: 128 VVDEKVNEKLEAEQRSEERRERKKEKKKKKNNKDED 163
>At4g20160.1 68417.m02949 expressed protein ; expression supported
by MPSS
Length = 1188
Score = 26.6 bits (56), Expect = 9.7
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 70 TLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLL--QILKEEINFKG 127
T KK ++ + G E+ E V K + + KL I KE + KG
Sbjct: 382 TEKKVLQETIEKSGVKEIKEVVSAVENAKKGVLSEISENRNGLKKLAGETIQKETVEGKG 441
Query: 128 S-RETLRKILRKNGFQFRKTKNNKDKEQA 155
RET K++ K + + K KE+A
Sbjct: 442 EKRETKEKVISKESLEGKGEKRESTKEKA 470
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2;
similar to DEAD box helicase protein GB:NP_006764 from
[Homo sapiens], contains Pfam profile: PF00270
DEAD/DEAH box helicase
Length = 568
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 69 ETLKKSPKKRVRTKGKIEVDEYDLQVI 95
ET KKS KK + +GKIE +E ++ +
Sbjct: 43 ETQKKSEKKVKKVRGKIEEEEEKVEAM 69
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 26.6 bits (56), Expect = 9.7
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 34 SKVYVRVSAATGVSERTVLNIAREARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQ 93
S ++ S A G + + I R E+ + K+ + R R + K +E +
Sbjct: 412 SVIFECASCAEGELSKLMREIEERKRREEEEI--ERRRKEEEEARKREEAKRREEE---E 466
Query: 94 VIRRKIHEFYAFKKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKNNKDKE 153
RR+ E K+E K + K E RE RK + Q RK + ++KE
Sbjct: 467 AKRREEEETERKKREEEEARKREEERKREEEEAKRREEERKKREEEAEQARKREEEREKE 526
Query: 154 Q 154
+
Sbjct: 527 E 527
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,212,078
Number of Sequences: 28952
Number of extensions: 173216
Number of successful extensions: 823
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 20
length of query: 181
length of database: 12,070,560
effective HSP length: 77
effective length of query: 104
effective length of database: 9,841,256
effective search space: 1023490624
effective search space used: 1023490624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -