GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002088-TA|BGIBMGA002088-PA|IPR001993|Mitochondrial
substrate carrier, IPR002067|Mitochondrial carrier protein
         (317 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.2  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   6.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   6.8  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    22   6.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   6.8  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   9.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 164 SFYEGVNASLLQMGPSV----GIGFAVFNFVQPLVLARMHNCDRGHCKSGRHHY 213
           S + G   +   MG S+    GI  +V ++ +PLV A+  N  R + +   HHY
Sbjct: 748 SSFPGHGPTTAPMGSSILKRLGIDESV-DYTKPLVDAQTMNLLRSYHQQQSHHY 800


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 209 GRHHYNPEHVLLASTI-AGSAS 229
           G+HH+N   V  AS++ A SAS
Sbjct: 73  GQHHHNGAAVSAASSVSAASAS 94


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 209 GRHHYNPEHVLLASTI-AGSAS 229
           G+HH+N   V  AS++ A SAS
Sbjct: 132 GQHHHNGAAVSAASSVSAASAS 153


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 209 GRHHYNPEHVLLASTI-AGSAS 229
           G+HH+N   V  AS++ A SAS
Sbjct: 73  GQHHHNGAAVSAASSVSAASAS 94


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 209 GRHHYNPEHVLLASTI-AGSAS 229
           G+HH+N   V  AS++ A SAS
Sbjct: 132 GQHHHNGAAVSAASSVSAASAS 153


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 291 ITIYKAQITSIVSFTSYELMCY 312
           +T+YK  +T  + F  YE+  Y
Sbjct: 266 LTMYKLSLTEDLYFAIYEMHWY 287


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,553
Number of Sequences: 317
Number of extensions: 2587
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 317
length of database: 114,650
effective HSP length: 57
effective length of query: 260
effective length of database: 96,581
effective search space: 25111060
effective search space used: 25111060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)