GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002087-TA|BGIBMGA002087-PA|IPR001398|Macrophage
migration inhibitory factor
         (120 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   4.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   5.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   5.7  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 24  IPVLSKAVQKSPEKFICL 41
           I +++ A+Q SP+K + L
Sbjct: 146 ISLITMAIQNSPQKMLTL 163


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 45  DCALSIGGESSTPGAVATLESIGNLG 70
           D A S+    S+PGA++ L S+ + G
Sbjct: 672 DDAESLNQSISSPGALSGLSSLTSPG 697


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 45  DCALSIGGESSTPGAVATLESIGNLG 70
           D A S+    S+PGA++ L S+ + G
Sbjct: 564 DDAESLNQSISSPGALSGLSSLTSPG 589


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,955
Number of Sequences: 317
Number of extensions: 955
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 114,650
effective HSP length: 50
effective length of query: 70
effective length of database: 98,800
effective search space:  6916000
effective search space used:  6916000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)