GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002087-TA|BGIBMGA002087-PA|IPR001398|Macrophage
migration inhibitory factor
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    30   0.086
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   4.3  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    24   5.7  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    24   7.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   7.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   7.5  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    23   9.9  

>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 30.3 bits (65), Expect = 0.086
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 48  LSIGGESSTPGAVATLESIGNLGPS--QNKVIAKEISDFVEKELGISKDRFFLTFYDLKN 105
           L +G +   P   +TLE I   GP       IA+ +  FV+++ GI      LT  D+ N
Sbjct: 262 LHVGEKFYRPALASTLEEIAKFGPEVFYTGKIAERLVKFVQQQGGI------LTMEDMAN 315

Query: 106 FNV 108
           F+V
Sbjct: 316 FSV 318


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 63  LESIGNLG--PSQNKVIAKEISDFVEKELGISKDRFFLTFYDLKNFNV 108
           LE I   G  PS   V    ISD + K L     RF  TFY    F +
Sbjct: 424 LEKIKKQGSLPSTTPVNEGGISDIIPKSLYDQVIRFISTFYKAPVFGI 471


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 68  NLGPSQNKVIAKEISDFVEKELGISKDRFFLTFY-DLKNF 106
           NL P+Q K++  EI           KD F   ++ +LK F
Sbjct: 66  NLTPAQRKLLQLEIDTLESSWFDALKDEFLKPYFLNLKEF 105


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 49  SIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDF 84
           S+GG   T G    + S  +LG     +IA  ++DF
Sbjct: 118 SLGGHELTNGGKEFITSATSLGALLGGIIAGALADF 153


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 15  IPNDFVNKIIPVLSKAVQKSPEKF 38
           IPNDF  ++I    K V++  EKF
Sbjct: 803 IPNDFHRQLIGSNGKYVRRLEEKF 826


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1274

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 11 TNSFIPNDFVNKIIPV 26
          TN  IP+D+ NK  PV
Sbjct: 54 TNIMIPSDYSNKFYPV 69


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 6   IFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLI--SPDCALSIG 51
           +F+  + +  P+D + K  PV+ + VQK  EK   L+   P+ A  +G
Sbjct: 94  VFSYRSATTQPDDTIFKD-PVMDEQVQKLEEKMSSLVVNDPELAQKVG 140


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,304
Number of Sequences: 5004
Number of extensions: 20039
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 2,362,478
effective HSP length: 65
effective length of query: 55
effective length of database: 2,037,218
effective search space: 112046990
effective search space used: 112046990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)