Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002087-TA|BGIBMGA002087-PA|IPR001398|Macrophage
migration inhibitory factor
(120 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709 61 2e-10
12_01_0047 + 410349-410459,411289-411489,412251-412454 58 1e-09
11_01_0045 + 346817-347168,347582-347713,347790-347968,348654-34... 58 1e-09
09_02_0155 - 5066379-5068385 37 0.004
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490... 29 1.0
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400... 28 2.3
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 27 4.1
03_02_0342 - 7645323-7645909,7646323-7646491 27 4.1
10_08_0589 + 19022233-19022457,19022578-19022709,19023129-190232... 27 5.4
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921... 27 5.4
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 27 5.4
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602... 26 7.1
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 26 7.1
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 26 7.1
01_01_1164 + 9263990-9264409,9264498-9264603,9264825-9264877,926... 26 7.1
09_06_0041 - 20440266-20441381 26 9.4
>06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709
Length = 115
Score = 61.3 bits (142), Expect = 2e-10
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 1 MPCLKIFTNL-TNSFIPNDFVNKIIPVLSKAVQKSPEKFICL-ISPDCALSIGGESSTPG 58
MP L + TN+ ++ + D + L++ + K PE ++ + IS +S S P
Sbjct: 1 MPQLSLTTNVPVDAVVAADIIKDCSKALARIIGK-PESYVMVSISGSVPMSFAA-SEEPA 58
Query: 59 AVATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGIT 114
A L SIG +GP N ++ +++ +E +L +S+ RF++ F D+K FN+ G T
Sbjct: 59 AYGELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGFNLGFNGST 114
>12_01_0047 + 410349-410459,411289-411489,412251-412454
Length = 171
Score = 58.4 bits (135), Expect = 1e-09
Identities = 32/104 (30%), Positives = 47/104 (45%)
Query: 1 MPCLKIFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAV 60
MPCL + TN+ + V + PE ++ ++ G + P A
Sbjct: 1 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 60
Query: 61 ATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLK 104
L SIG L P NK ++ I+ +E +L I K RF+L FYD K
Sbjct: 61 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSK 104
>11_01_0045 +
346817-347168,347582-347713,347790-347968,348654-348789,
348974-349070,349206-349306,349618-349781,349867-349938,
350034-350150,350235-350369,350421-350532,351197-351513,
353065-353265,353467-353544
Length = 730
Score = 58.4 bits (135), Expect = 1e-09
Identities = 32/104 (30%), Positives = 47/104 (45%)
Query: 1 MPCLKIFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAV 60
MPCL + TN+ + V + PE ++ ++ G + P A
Sbjct: 602 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 661
Query: 61 ATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLK 104
L SIG L P NK ++ I+ +E +L I K RF+L FYD K
Sbjct: 662 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSK 705
>09_02_0155 - 5066379-5068385
Length = 668
Score = 37.1 bits (82), Expect = 0.004
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 7 FTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAVATLESI 66
F + NS + + VN + + S +S + LI+P LS ++ P L +I
Sbjct: 72 FRSSPNSTVQSFSVNFMFAIQSFYSDRSYDGMAFLIAPSNNLS----TAWPDGYLGLFNI 127
Query: 67 GNLGPSQNKVIAKEISDFVEKELG-ISKDRFFLTFYDLKNFNVAKGGITVD 116
N G S N+++A E+ F E G IS + D+++ N + G D
Sbjct: 128 SNRGNSSNRILAVELDTFQNNEFGDISNSHVGIDINDVRSVNSSFAGFYDD 178
>03_02_0010 +
4903473-4903525,4904117-4904175,4904285-4904355,
4904469-4904585,4907001-4907024,4907055-4907117,
4907303-4907407,4907552-4907602,4907702-4908535
Length = 458
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 59 AVATLESIGNLGPSQ-NKVIAKEISDFVEKELGISKDRFFLT 99
A++T E GP Q +K + KEI+D V ++GI + F++
Sbjct: 112 ALSTPEGYQGYGPEQGHKNLRKEIADKVYPDMGIKESEVFIS 153
>12_01_0505 -
4005211-4005234,4005235-4005432,4005522-4006006,
4006533-4006700,4007128-4007203,4007327-4007409,
4007511-4007589,4007685-4007753,4008174-4008266,
4008668-4008713,4009398-4009522
Length = 481
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 79 KEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGITV 115
K++S +EK + +S++ F+LT+ + F + G + V
Sbjct: 223 KQLSQMIEKRISLSRESFYLTYLG-QTFRMVDGCMEV 258
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 27.1 bits (57), Expect = 4.1
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 1 MPCLKIFTNLTNSFIPNDFVNKIIPV----LSKAVQKSPEKFICLISPDCALSIGG-ESS 55
M L T LTN ++ + + IIP LS+ ++ CL L + S
Sbjct: 265 MSSLTNCTQLTNLWLDRNKLQGIIPSSITNLSEGLKIPTSLGECLELESVHLEGNFLQGS 324
Query: 56 TPGAVATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGI 113
PG+ A L+ I + S+N ++ EI DF E G S L+F +L+ V +GG+
Sbjct: 325 IPGSFANLKGINEMDLSRNN-LSGEIPDFFE-YFG-SLHTLNLSFNNLEG-PVPRGGV 378
>03_02_0342 - 7645323-7645909,7646323-7646491
Length = 251
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 42 ISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFF 97
+ DC + TP A T I GP N IA +D L +S D F
Sbjct: 101 LDKDCFAQLHSAPETPCAGQTPPRIAKAGPG-NDTIAAAAADAAPTYLAVSDDTLF 155
>10_08_0589 +
19022233-19022457,19022578-19022709,19023129-19023227,
19023384-19023431,19023926-19023976,19024205-19024273,
19024337-19024419,19024643-19024766,19024843-19024902,
19024983-19025225,19025426-19025509,19025581-19025728,
19025909-19025986,19025987-19026114,19026204-19026251,
19026922-19027052,19027708-19027817,19028365-19028468,
19028614-19028684,19029091-19029389,19029507-19029682
Length = 836
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 39 ICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEK 87
+C+++ C + + G+ S+P L S + G ++A ++D +++
Sbjct: 210 VCIVNGRCCIKVTGDKSSPFDGLLLSSGTDAGSMVEPIVAVPLNDELQQ 258
>09_04_0285 +
16390786-16391291,16391370-16391957,16392034-16392160,
16392291-16392477,16392585-16392741,16392847-16393201
Length = 639
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 80 EISDFVE--KELGISKDRFFLTFY 101
E+SD V K LG+S+D+ FL F+
Sbjct: 135 EVSDMVHCRKRLGVSEDQVFLEFF 158
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 15 IPNDFVNKIIPVLSKAVQKSPEKFICLI 42
+ ND +N + P+L++ KS +K CLI
Sbjct: 359 VENDILNYLAPLLARNYPKSIKKQACLI 386
>11_01_0728 +
6023361-6023495,6024880-6025212,6025306-6025361,
6025526-6025684,6025790-6025889,6026481-6026623,
6026728-6026833,6027139-6027277,6027363-6027631,
6027734-6027820
Length = 508
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 72 SQNKVIAKEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGITVDVL 118
S NK I ++F++++L +SKD LT + + A G + V+
Sbjct: 276 SDNKAIGSHGAEFLKQKLEVSKDISVLTHCNTGSLATAGYGTALGVI 322
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 29 KAVQKSPEKFICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAK 79
K V+ S +C+ CAL G E++ + TL + P N+ IAK
Sbjct: 1956 KKVRFSEAATLCIPHLVCALKDGNEAAQESVLDTLCLLKESWPQMNEDIAK 2006
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 4 LKIFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALS 49
LK NL I +F N+ +P +A+ E +CL DCALS
Sbjct: 419 LKSLRNLNVLLIGGNFKNEAMPQ-DEAINGF-ENILCLAIEDCALS 462
>01_01_1164 +
9263990-9264409,9264498-9264603,9264825-9264877,
9265249-9265380,9266250-9266372
Length = 277
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 49 SIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEKEL 89
+IG + T GA+A L G+ N + +S+F+ K L
Sbjct: 119 AIGVDPDTGGAIAVLSPDGSSQVFDNPFVHIVVSEFIRKRL 159
>09_06_0041 - 20440266-20441381
Length = 371
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 43 SPDCALSIGGESSTPGAVATLES 65
SP +++ GG+SSTP + A +S
Sbjct: 13 SPPASIAAGGDSSTPTSAAPADS 35
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,217
Number of Sequences: 37544
Number of extensions: 111922
Number of successful extensions: 332
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 17
length of query: 120
length of database: 14,793,348
effective HSP length: 73
effective length of query: 47
effective length of database: 12,052,636
effective search space: 566473892
effective search space used: 566473892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -