Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002087-TA|BGIBMGA002087-PA|IPR001398|Macrophage
migration inhibitory factor
(120 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07) 28 2.3
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 27 4.1
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23) 27 5.4
SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13) 27 5.4
SB_23785| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_15184| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 26 7.2
SB_10046| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_27239| Best HMM Match : Ion_trans (HMM E-Value=3.8e-39) 26 9.5
>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
Length = 635
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 58 GAVATLESIGNLGPSQNKVIAKEISDFVEKELGISKD 94
G T E +LG +Q K + K +D +E E G SKD
Sbjct: 76 GLTRTDEFFQSLGNTQEKGMLKTPADMIEHESGDSKD 112
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 42 ISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIA 78
+SPD A + GE + A+AT S G++ S + V A
Sbjct: 386 MSPDAATNSSGEQISNAAIATQTSCGHVTSSASDVPA 422
>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
Length = 1268
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 53 ESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEK-ELGISKD 94
E S G ++ L+ G+ P+Q+ +A EISD +K E G K+
Sbjct: 1225 EKSCEGNLSMLKPEGSDQPTQSASVATEISDSTDKTEEGSKKN 1267
>SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)
Length = 244
Score = 26.6 bits (56), Expect = 5.4
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 17 NDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTP----GAVATLESI--GNLG 70
+DF + P+LS+++ KS +F S +S G + S+ G++A+ ES+ G
Sbjct: 43 SDFDGNLGPLLSESIPKSINEFTSSTSRGSPVSPGSQVSSDEGRGGSIASSESVVSGQSS 102
Query: 71 PSQN 74
S+N
Sbjct: 103 GSEN 106
>SB_23785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 53 ESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEK 87
E S G ++ L+ G+ P+Q+ +A E+SD EK
Sbjct: 829 EKSCEGNLSMLKPEGSDQPTQSASVATEMSDSTEK 863
>SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 41 LISPDCALSIGG--ESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEKEL 89
L D A ++G E P LE+ L +NK +A E +F+EK +
Sbjct: 141 LFGTDAATNVGKQQEKRKPNNALYLENRTELDFQRNKKLANEQDEFMEKHI 191
>SB_15184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/68 (20%), Positives = 34/68 (50%)
Query: 21 NKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKE 80
+ + +L++++Q+ I IS + GGE + P + ++ K++ ++
Sbjct: 67 DSLTTILNQSLQQGVVPDILKISKITPVDKGGEITDPFNFRPISTLSTFTQVLEKLVYQQ 126
Query: 81 ISDFVEKE 88
I ++VEK+
Sbjct: 127 IINYVEKQ 134
>SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 52 GESSTPGAVATLESIGNLGPSQNKVIAKEISD 83
GE+ P A+ATL+ NL + K++ K++S+
Sbjct: 115 GETMFPVALATLQKDENLEQMRFKLVPKKVSE 146
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/68 (20%), Positives = 34/68 (50%)
Query: 21 NKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKE 80
+ + +L++++Q+ I IS + GGE + P + ++ K++ ++
Sbjct: 109 DSLTTILNQSLQQGVVPDILKISKITPVDKGGEITDPFNFRPISTLSTFTQVLEKLVYQQ 168
Query: 81 ISDFVEKE 88
I ++VEK+
Sbjct: 169 IINYVEKQ 176
>SB_10046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/80 (21%), Positives = 38/80 (47%)
Query: 17 NDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKV 76
ND + + +L++++Q+ I IS + GGE + P + + K+
Sbjct: 2 NDISDSLTTILNQSLQQGVVPDILKISKITPVDKGGEITDPFNFRPISTPSTFTQVLEKL 61
Query: 77 IAKEISDFVEKELGISKDRF 96
+ ++I ++V K+ + K +F
Sbjct: 62 VYQQIINYVGKQNILYKCQF 81
>SB_27239| Best HMM Match : Ion_trans (HMM E-Value=3.8e-39)
Length = 307
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 88 ELGISKDRFFLTFYDLKNFNVAKGGITVDVL 118
E G+SKD+F ++ NF++ K + + VL
Sbjct: 259 EFGLSKDKFKSYYHTFANFSMGKQFLPLRVL 289
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,602,961
Number of Sequences: 59808
Number of extensions: 127618
Number of successful extensions: 256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 12
length of query: 120
length of database: 16,821,457
effective HSP length: 74
effective length of query: 46
effective length of database: 12,395,665
effective search space: 570200590
effective search space used: 570200590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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