GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002087-TA|BGIBMGA002087-PA|IPR001398|Macrophage
migration inhibitory factor
         (120 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    25   0.55 
AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450 CY...    24   1.7  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   2.9  

>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 57  PGAVATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRF 96
           PG+V  +  +   G    ++I + ++  +E+  G+S D+F
Sbjct: 471 PGSVRPICLLDGAGKGLERIIVQRLNAHIEEVNGLSDDQF 510


>AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450
           CYPm3r9 protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 12  NSFIPNDFVNKIIPVLSKAVQKSPE 36
           N+   NDFV+ +I ++SK  +KS E
Sbjct: 262 NNVQRNDFVDLLIKMMSKDGEKSDE 286


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 57  PGAVATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRF 96
           P A   L  + NL   Q  VI   ++ + E   G+S  +F
Sbjct: 528 PSAFRPLGLVDNLAKVQEMVILDRLTKYTEGPHGLSDRQF 567


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,900
Number of Sequences: 2123
Number of extensions: 3900
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 516,269
effective HSP length: 57
effective length of query: 63
effective length of database: 395,258
effective search space: 24901254
effective search space used: 24901254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)