Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002087-TA|BGIBMGA002087-PA|IPR001398|Macrophage
migration inhibitory factor
(120 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78012-2|CAB01412.1| 120|Caenorhabditis elegans Hypothetical pr... 66 5e-12
AL132860-2|CAB60512.1| 117|Caenorhabditis elegans Hypothetical ... 52 8e-08
AC084197-17|AAG23475.1| 121|Caenorhabditis elegans Mif (macroph... 46 1e-05
U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical pr... 30 0.51
U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical pr... 30 0.51
AF003386-10|AAB54251.1| 189|Caenorhabditis elegans Hypothetical... 29 0.67
AL132948-30|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 28 2.0
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z79755-12|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 27 2.7
U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha ... 27 3.6
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr... 26 6.2
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr... 26 6.2
>Z78012-2|CAB01412.1| 120|Caenorhabditis elegans Hypothetical
protein C52E4.2 protein.
Length = 120
Score = 66.5 bits (155), Expect = 5e-12
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 1 MPCLKIFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAV 60
MP +++ TNL N +P DF ++ +L++++ K E+ I+ L + G + P V
Sbjct: 1 MPMVRVATNLPNEKVPVDFEIRLTDLLARSMGKPRERIAVEIAAGARL-VHGATHDPVTV 59
Query: 61 ATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGITV 115
+++SIG + N I++F KELG+ KD+ +TF+DL V G TV
Sbjct: 60 ISIKSIGAVSAEDNIRNTAAITEFCGKELGLPKDKVVITFHDLPPATVGFNGTTV 114
>AL132860-2|CAB60512.1| 117|Caenorhabditis elegans Hypothetical
protein Y56A3A.3 protein.
Length = 117
Score = 52.4 bits (120), Expect = 8e-08
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 4 LKIFTNLTNSFIPNDFVNKIIPVLSKAVQK---SPEKFICL-ISPDCALSIGGESSTPGA 59
+ +F+ N +P + N+I+ LS + K PE+++C+ D + G ++ P
Sbjct: 1 MPVFSINVNVKVPAEKQNEILKELSTVLGKLLNKPEQYMCIHFHEDQGILYAG-TTEPAG 59
Query: 60 VATLESIGNLGPS-QNKVIAKEISDFVEKELGISKDRFFLTFYDLKNFNVAKGGIT 114
A L+SIG +G + QN I+ + +EK LGI +R ++ F +L ++A G T
Sbjct: 60 FAVLKSIGGVGSAKQNNAISAVVFPIIEKHLGIPGNRLYIEFVNLGAADIAYNGQT 115
>AC084197-17|AAG23475.1| 121|Caenorhabditis elegans Mif (macrophage
migration inhibitoryfactor) related protein 4 protein.
Length = 121
Score = 45.6 bits (103), Expect = 1e-05
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 1 MPCLKIFTNLTNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIGGES-STPGA 59
M ++I TN+ ++ IP F +I LS ++ +KF+ ++ P + IG E+ P A
Sbjct: 1 MQVVRIQTNIRSADIPEKFEQDVIYNLSVVMELPADKFVIIVEPAVRMRIGFENKEIPVA 60
Query: 60 VATLESIGNLGPSQNKVIAKEISDFVEKELGISKDRFFLT--FYDLKNF 106
+ ++ +N AK+++ + ++L + F++ F D K+F
Sbjct: 61 IVNFQTTRPSSRIENDSYAKKLTSVLNEQLKLDPAHIFISFDFKDAKSF 109
>U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical
protein F18A1.6a protein.
Length = 731
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 35 PE-KFICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEKELGI 91
PE KF+ ++P ++S S G++A ES+ + S V +EI D ++ EL I
Sbjct: 48 PELKFVWDVTPSTSISPVNLSGEDGSIADAESLMDSSGSNQSVSFEEIDDPLKTELTI 105
>U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical
protein F18A1.6b protein.
Length = 734
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 35 PE-KFICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEKELGI 91
PE KF+ ++P ++S S G++A ES+ + S V +EI D ++ EL I
Sbjct: 51 PELKFVWDVTPSTSISPVNLSGEDGSIADAESLMDSSGSNQSVSFEEIDDPLKTELTI 108
>AF003386-10|AAB54251.1| 189|Caenorhabditis elegans Hypothetical
protein F59E12.10 protein.
Length = 189
Score = 29.5 bits (63), Expect = 0.67
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 17 NDFVNKIIPVLSKAVQK---SPEKFICLISPDCALSIGGESST--PGAVATLESIGNLGP 71
N+F NK+ +L KA Q + K + S +S+ +S+T P + ++ I P
Sbjct: 40 NNFGNKMEDILEKAEQSLDTADRKLRLMESKLAGMSLEDKSTTATPSSAPEIDEIHESNP 99
Query: 72 SQNKVIAKEISDFVEKE---LGISKDRFFLTFYDLKNFNVAKGGI 113
S ++++ + + + E+ + I D + ++ + V + G+
Sbjct: 100 SSSQIVEETVEEKPEEHTTTVLIKDDPAYSKYFKMLKLGVLEAGV 144
>AL132948-30|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 24 IPVLSKAVQKSPEKFICLISPDCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKE 80
+ V+ K K+P K I + P ++ GG S P + E + + + K+I E
Sbjct: 160 LKVVKKKQPKTPGKSITSLLPAVQIAEGGASYNPESAEYQEYVAKIAGEEQKLIDHE 216
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 45 DCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEK 87
D L +GG +S + TLE I + KEI F+EK
Sbjct: 774 DSLLKMGGRTSFRQLIGTLELIAEEQSKAGRSFHKEIRKFLEK 816
>Z79755-12|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 45 DCALSIGGESSTPGAVATLESIGNLGPSQNKVIAKEISDFVEK 87
D L +GG +S + TLE I + KEI F+EK
Sbjct: 774 DSLLKMGGRTSFRQLIGTLELIAEEQSKAGRSFHKEIRKFLEK 816
>U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha
chain (clathrinassociated complex) protein 2 protein.
Length = 925
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 4 LKIFTNLTNSFIPNDFVNKIIPVLS 28
LK+F N +SF P D+ ++I+ +L+
Sbjct: 172 LKLFRNSPDSFQPGDYASRIVHLLN 196
>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical protein
H08M01.2b protein.
Length = 1341
Score = 26.2 bits (55), Expect = 6.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 17 NDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIG-----GESSTPGAVA---TLESIGN 68
N K+ VLS K+ +K + S LS +ST G +A TLE++ +
Sbjct: 1096 NSTTEKVSNVLSWLPSKTSKKLMKNKSATHDLSTSLINYPASTSTQGVIAANETLETLCS 1155
Query: 69 LGPSQNKVIAKEISDFVEKELGISKDRFF 97
PSQ + ++ F+E+ G ++ +
Sbjct: 1156 KSPSQIPIYLEKCIQFIEQNGGFEQEGLY 1184
>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical protein
H08M01.2a protein.
Length = 1320
Score = 26.2 bits (55), Expect = 6.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 17 NDFVNKIIPVLSKAVQKSPEKFICLISPDCALSIG-----GESSTPGAVA---TLESIGN 68
N K+ VLS K+ +K + S LS +ST G +A TLE++ +
Sbjct: 1096 NSTTEKVSNVLSWLPSKTSKKLMKNKSATHDLSTSLINYPASTSTQGVIAANETLETLCS 1155
Query: 69 LGPSQNKVIAKEISDFVEKELGISKDRFF 97
PSQ + ++ F+E+ G ++ +
Sbjct: 1156 KSPSQIPIYLEKCIQFIEQNGGFEQEGLY 1184
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,998
Number of Sequences: 27539
Number of extensions: 104345
Number of successful extensions: 298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 14
length of query: 120
length of database: 12,573,161
effective HSP length: 73
effective length of query: 47
effective length of database: 10,562,814
effective search space: 496452258
effective search space used: 496452258
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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