GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002086-TA|BGIBMGA002086-PA|undefined
         (79 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   0.69 
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    24   2.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    23   3.7  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    23   3.7  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    22   8.5  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    22   8.5  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    22   8.5  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 39  CSDSTLAGQLNRSGFSSVVCVEGINP 64
           CSD T     NR       CVEG++P
Sbjct: 462 CSDKTGTLTKNRLSLGEPYCVEGVSP 487


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 37  LDCSDSTLAGQLNRSGFSSVVCVEGINPVPSS 68
           +DC+D  +A   N    +  + VEG++ V +S
Sbjct: 121 VDCADDAIAAFRNNGKIAIALGVEGLHQVDTS 152


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 38  DCSDSTLAGQLNRSGFSSVVCVEGINP 64
           D + S++ G+  R+ FSSV+C E + P
Sbjct: 335 DIAGSSICGK--RNYFSSVICKELVRP 359


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 10  LEYSLHFCYESPVSHPNNSACLHSSQHLDCSDSTLAGQLNRSGFSSVVCVEGINPVPSSG 69
           L Y L FC E   + P NS+   +S   +  D    G      F+  + +   N    S 
Sbjct: 290 LIYDLQFCSEVAYAVPGNSSLFSASALAEWYDQQAYGYY--QNFTYTLDLIPCNATSWSA 347

Query: 70  FQILK 74
           + +LK
Sbjct: 348 YSLLK 352


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 19  ESPVSHPNNSACLHSSQHLDCSDS 42
           E   S PN S+  ++S  LD SD+
Sbjct: 233 EEDTSTPNTSSFQNNSSSLDLSDN 256


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 32  HSSQHLDCSDSTL-AGQLNRSGFSSVVCVEGINPVPSSGFQ 71
           +++ H+  S++ L     N SGF    C+E   P+ + G +
Sbjct: 276 YATPHIKESNTPLFTYNFNISGFDGDSCIEKFTPLDALGIK 316


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 1   MIFRTKHKLLEYSLHFCYESPVSHPNNSACLHSSQHLD 38
           +I R  ++    ++HF ++S  S  ++ A  HSS+  D
Sbjct: 344 LIERDLYRTFPDNVHFRHKSKHSRNSSDASEHSSEEPD 381


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,791
Number of Sequences: 5004
Number of extensions: 14635
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 7
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)