Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002086-TA|BGIBMGA002086-PA|undefined
(79 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477 28 0.83
12_02_0371 - 18187169-18188386 27 1.9
10_02_0125 - 5537541-5538758 27 1.9
08_01_0725 - 6480773-6481203,6481802-6482801 27 1.9
04_04_0086 - 22679233-22680450 27 1.9
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 27 1.9
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 27 2.5
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 27 2.5
08_02_1435 + 27079184-27082006 26 3.3
02_01_0705 - 5259949-5263887,5266207-5266509 26 3.3
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940... 26 4.4
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 25 5.8
01_01_0433 + 3282195-3285185 25 5.8
01_01_0430 + 3258438-3259200,3259929-3261454 25 5.8
>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
Length = 486
Score = 28.3 bits (60), Expect = 0.83
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 13 SLHFCYESPVSHPNNSACLHSSQHLDCSDSTLAGQLNRSGFSSVVCVEGINPVPSSG 69
SL + +SHP + + + D S L L ++GFS++ + G PS G
Sbjct: 223 SLDYYLFQLMSHPVSDGHIKYDNYFDASIDALVTSLTKAGFSNMDIIVGRVGWPSDG 279
>12_02_0371 - 18187169-18188386
Length = 405
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 PVSHPNNSACLHSSQHLDCSDSTLAGQLN 49
P+S +N AC SS H D +DS G N
Sbjct: 269 PISDHSNKACNVSSIHQDVNDSINVGTQN 297
>10_02_0125 - 5537541-5538758
Length = 405
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 PVSHPNNSACLHSSQHLDCSDSTLAGQLN 49
P+S +N AC SS H D +DS G N
Sbjct: 269 PISDHSNKACNVSSIHQDVNDSINVGTQN 297
>08_01_0725 - 6480773-6481203,6481802-6482801
Length = 476
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 PVSHPNNSACLHSSQHLDCSDSTLAGQLN 49
P+S +N AC SS H D +DS G N
Sbjct: 269 PISDHSNKACNVSSIHQDVNDSINVGTQN 297
>04_04_0086 - 22679233-22680450
Length = 405
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 PVSHPNNSACLHSSQHLDCSDSTLAGQLN 49
P+S +N AC SS H D +DS G N
Sbjct: 269 PISDHSNKACNVSSIHQDVNDSINVGTQN 297
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 1 MIFRTKHKLLEYSLHFCYESPVSHPNNSACLHSSQHLDCSDSTLAGQL 48
M F ++L SL CY+ S P + LH HLD SD G+L
Sbjct: 644 MSFGNLNRLQFLSLSDCYKLN-SLPESCCQLHDLAHLDLSDCYNLGKL 690
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 46 GQLNRSGFSSVVCVEGINPVPSSGFQILKPD 76
G+L S + C+ GINPV F I+KPD
Sbjct: 482 GRLEASYSLTFDCLSGINPVEEQYF-IMKPD 511
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 19 ESPVSHPNNSACLHSSQHLDCSDSTLAGQLNRSGFSSVVCVEGI-NPV 65
+ P+++ + L S H++C S + G + + F +V V+G+ NP+
Sbjct: 94 DDPITNAGRGSNLTESGHVECDASIMDG--STTTFGAVGAVQGVKNPI 139
>08_02_1435 + 27079184-27082006
Length = 940
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 25 PNNSACLHSSQHLDCSDSTLAGQLNRS 51
P + LH+ Q+LD S++ L+G + RS
Sbjct: 674 PEELSQLHALQYLDLSNNKLSGSIPRS 700
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 25 PNNSACLHSSQHLDCSDSTLAGQL 48
P + C S HLD SD+ ++GQ+
Sbjct: 860 PLDLLCKESLNHLDVSDNNISGQI 883
>04_04_1570 -
34492944-34493159,34493668-34493842,34493964-34494068,
34494454-34494623,34494760-34494830,34494950-34496799,
34497003-34497052,34497147-34497263
Length = 917
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 10 LEYSLHFCYES--PVSHPNNSACLHSSQHLDCSDSTLAGQLNRSGFS 54
+E S H Y S+ NNS CL S+ +DS+L G S ++
Sbjct: 267 IELSRHASYFECCEQSNSNNSRCLDSASTSTLTDSSLDGHYTDSSWN 313
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 10 LEYSLHFCYESPVSHPNNSACLHSSQHLDCS 40
L SL SP + +AC SQH DCS
Sbjct: 410 LSSSLQVLVGSPQLNEKTTACEARSQHHDCS 440
>01_01_0433 + 3282195-3285185
Length = 996
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 25 PNNSACLHSSQHLDCSDSTLAGQL 48
PN A LH + LD S + L+G++
Sbjct: 873 PNQLASLHQLESLDLSSNKLSGEI 896
>01_01_0430 + 3258438-3259200,3259929-3261454
Length = 762
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 25 PNNSACLHSSQHLDCSDSTLAGQL 48
PN A LH + LD S + L+G++
Sbjct: 644 PNQLASLHQLESLDLSSNKLSGEI 667
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,654
Number of Sequences: 37544
Number of extensions: 87200
Number of successful extensions: 245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 16
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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