GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002086-TA|BGIBMGA002086-PA|undefined
         (79 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          27   2.1  
SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)                    27   2.8  

>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 20  SPVSHPNNSACLHSSQHLDCSDSTLAGQLNRSGFSSVVCVEGINPVPSS 68
           SPVSHP   A LH+S     +  +          S+  C    NP P+S
Sbjct: 473 SPVSHPPAQALLHTSHPSPATHPSPKPCFTFLTLSTKPCFSPSNPSPAS 521


>SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)
          Length = 485

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 17  CYESPVSHPNNSACLHSSQHLDCSDSTLAGQLN 49
           C+ SP++ P +S CLH S HL      +AG L+
Sbjct: 192 CWLSPLA-PQDS-CLHLSHHLPQGTRRIAGMLH 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,668
Number of Sequences: 59808
Number of extensions: 101550
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 3
length of query: 79
length of database: 16,821,457
effective HSP length: 57
effective length of query: 22
effective length of database: 13,412,401
effective search space: 295072822
effective search space used: 295072822
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)