GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002086-TA|BGIBMGA002086-PA|undefined
         (79 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75531-3|CAA99799.1|  172|Caenorhabditis elegans Hypothetical pr...    25   4.8  
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    25   4.8  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    25   4.8  
U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    25   8.4  
L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        25   8.4  
AF003149-3|AAC48046.1|  339|Caenorhabditis elegans Hypothetical ...    25   8.4  
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    25   8.4  
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    25   8.4  

>Z75531-3|CAA99799.1|  172|Caenorhabditis elegans Hypothetical
          protein C54D10.3 protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 25 PNNSACLHSSQHLDCSDSTLAGQLNRSGFSSVVCVEGINP 64
          P   ACL +S   + +D  ++     +  S+  CV+ +NP
Sbjct: 40 PEGMACLTNSTCCEYADIQVSTTTTTTAASTSTCVDKVNP 79


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 27  NSACLHSSQHLDCSDSTLAGQLNRSGFSSVVCVEGINPVP 66
           +S  L + QH+   D  +    N    + V+CV  I P P
Sbjct: 525 HSTSLKAKQHVPPFDGIVHNDPNFDEMNDVICVRRIRPPP 564


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 27  NSACLHSSQHLDCSDSTLAGQLNRSGFSSVVCVEGINPVP 66
           +S  L + QH+   D  +    N    + V+CV  I P P
Sbjct: 525 HSTSLKAKQHVPPFDGIVHNDPNFDEMNDVICVRRIRPPP 564


>U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical
           protein C18B10.6 protein.
          Length = 436

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 12  YSLHFCYESPVSHPNNSACLHSSQHLDCSDSTLAGQ 47
           Y LHF  +S +  P  +  L SSQH +    T+  +
Sbjct: 372 YKLHFPLKSLMVLPGIATFLDSSQHSESEKKTVRNE 407


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 35  QHLDCSDSTLAGQLNRSGFSS 55
           + L+C  ST+A  L R GF+S
Sbjct: 94  EKLECCHSTIARHLGRLGFTS 114


>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 21  PVSHPNNSACLHSSQHLDCSDSTLAGQLNRSGF 53
           P++H  +    H+S H D S     G   R+GF
Sbjct: 204 PLNHSLSPPGFHNSHHRDDSLVLAGGNFRRNGF 236


>AF003149-3|AAC48046.1|  339|Caenorhabditis elegans Hypothetical
           protein K09E10.3 protein.
          Length = 339

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 35  QHLDCSDSTLAGQLNRSGFSS 55
           + L+C  ST+A  L R GF+S
Sbjct: 94  EKLECCHSTIARHLGRLGFTS 114


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
          protein Y49F6A.4 protein.
          Length = 514

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 35 QHLDCSDSTLAGQLNRSGFSS 55
          + L+C  ST+A  L R GF+S
Sbjct: 69 EKLECCHSTIARHLGRLGFTS 89


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 35  QHLDCSDSTLAGQLNRSGFSS 55
           + L+C  ST+A  L R GF+S
Sbjct: 94  EKLECCHSTIARHLGRLGFTS 114


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,468
Number of Sequences: 27539
Number of extensions: 77542
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 10
length of query: 79
length of database: 12,573,161
effective HSP length: 59
effective length of query: 20
effective length of database: 10,948,360
effective search space: 218967200
effective search space used: 218967200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)