GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002086-TA|BGIBMGA002086-PA|undefined
         (79 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   3.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    19   7.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 20  SPVSHPNNSACLHSSQHLDCSDSTLAGQL 48
           SP S    S C  ++  L  + STLA  L
Sbjct: 682 SPSSQAQASQCPQTASLLSSTHSTLARSL 710


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.0 bits (37), Expect = 7.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 1  MIFRTKHKLLEYSLHFCYESPVSHP 25
          M ++ +HK+   ++   + SP  HP
Sbjct: 61 MKWKKEHKMASMNIVPYHMSPYGHP 85


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,347
Number of Sequences: 429
Number of extensions: 803
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 79
length of database: 140,377
effective HSP length: 47
effective length of query: 32
effective length of database: 120,214
effective search space:  3846848
effective search space used:  3846848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)