GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002085-TA|BGIBMGA002085-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    74   5e-14
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    46   1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    30   0.85 
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    29   2.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.6  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 288 VNTYSEGQLVAMCMDMFMAGTETTSKSMSFCFSYLVREQEVQRKAQEEIDRV-VGKDRVP 346
           +  +S+ ++    +    A  + TS +M++ F  L    +V +K +EE  R+  G   VP
Sbjct: 301 IREFSDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVP 360

Query: 347 -SVNDRPNMPYNEAIVHECVRHFMGRTFGVPHRALRDTTLAGCH-IPEDTMVVSNYTNIL 404
            S++    M Y  A+V EC+R        VP+R  +   +   + +P+D MV+      L
Sbjct: 361 LSLDLMEKMTYTRAVVKECLR-LRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGAL 419

Query: 405 LDENYFPEPYSFKPERFLVNGRV-SLPDHYFPFGLAKHRCMGDALA 449
            D   +PEP +F P+R+  NG     P ++  FG   H C+G   A
Sbjct: 420 HDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYA 465


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 25/219 (11%)

Query: 293 EGQLVAMCMDMFMAGTETTSKSMSFCFSYLVREQEVQRKAQEEIDRVVGKDRVPSVNDRP 352
           E ++  M + + MAG  T++ ++ +  + L  + E+     EE  RVVG++     +   
Sbjct: 275 EHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQYK 334

Query: 353 NMPYNEAIVHECVRHFMGRTFGVPHRALRDTTLAGCH--IPEDTMVVSNYTNILLDENYF 410
           +MP    ++ E +R           +  RD  + G    IP +  +++       +E YF
Sbjct: 335 DMPLLNYVIQETLR-LHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYF 393

Query: 411 PEPYSFKPERFLVNGRVSLPDH------------------YFPFGLAKHRCMGDALAKCN 452
                F P+R+  N RV+  ++                  Y PFG  +HRC+G+  A  +
Sbjct: 394 THATDFDPKRW--NDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMH 451

Query: 453 IFVFTTTMLQRFSLVPVPGEGLPSLDHMDGATPSAAPFK 491
           +    +  +  ++   + G+ +P++D+         P K
Sbjct: 452 LSTIISKFVHDYTWTLI-GK-VPNVDYSSMVALPLGPVK 488


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 468 PVPGEGLPSLDHMDGATPSAAPFKALVIPRI 498
           PVP +G P +  M G+ PSA P +A  +P +
Sbjct: 537 PVPAQGRPMM--MPGSVPSAGPAEAEAVPAV 565


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 354 MPYNEAIVHECVRHFMGRTFGV 375
           +P +EAI+  CV +F GRT G+
Sbjct: 136 IPTDEAIILSCVDNFHGRTMGI 157


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 59  LSLTYCKETPVLGLRIGKDRIVMVNSLEANKEM 91
           LSL++C E P   L  GKD   MV ++E  + +
Sbjct: 264 LSLSWCPEDPTFLLSSGKDGRAMVWNVETGESL 296


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,522
Number of Sequences: 5004
Number of extensions: 100600
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 6
length of query: 498
length of database: 2,362,478
effective HSP length: 76
effective length of query: 422
effective length of database: 1,982,174
effective search space: 836477428
effective search space used: 836477428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)