GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002084-TA|BGIBMGA002084-PA|IPR003323|Ovarian tumour,
otubain
         (135 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   9.0  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory
          receptor candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 9  RGDGNCLFRSISYCVYG 25
          +G   CL  SI+YC+ G
Sbjct: 35 KGQKTCLNLSINYCICG 51


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 47  RYKDFIVGDRSYVYEI 62
           +Y  F+   RSY Y++
Sbjct: 411 QYTAFLYNGRSYTYQV 426


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,583
Number of Sequences: 317
Number of extensions: 1197
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 114,650
effective HSP length: 51
effective length of query: 84
effective length of database: 98,483
effective search space:  8272572
effective search space used:  8272572
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.2 bits)
S2: 39 (19.8 bits)