Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002084-TA|BGIBMGA002084-PA|IPR003323|Ovarian tumour,
otubain
(135 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 34 0.007
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 30 0.11
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 28 0.58
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 26 1.8
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 2.3
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 4.1
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 4.1
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 4.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 5.4
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 5.4
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 24 7.1
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 24 7.1
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch... 24 9.4
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 34.3 bits (75), Expect = 0.007
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 6 IPIRGDGNCLFRSISYCV---YGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEI 62
+ I DGNCLF SIS+ + + + + +RN D ++ + +++ F++ + S E+
Sbjct: 188 VDIPADGNCLFASISHQLNYHHNVKLNSQALRNKSADYVLKHCEQFEGFLLDEES--GEV 245
Query: 63 RNATDYSRIMSRDGEFAGHAELHCVS 88
+DY + + ++ E+ ++
Sbjct: 246 LPVSDYCNEIRNNSKWGSDIEIQALA 271
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 30.3 bits (65), Expect = 0.11
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 57 SYVYEIRNATDYSR---IMSRDGEFAGHAELHCVSELFKEYTFKVHRLG-CSRTTDYGRG 112
S V E N+ D+S + R+ + H H + +L+ T K+ RLG C + + G
Sbjct: 227 SQVIEAENSEDFSSNSLFIKREDDDGKHISSHAIEKLYMALT-KLSRLGACDKLLEEGSI 285
Query: 113 MITKHLL 119
++ K +L
Sbjct: 286 ILVKQIL 292
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.9 bits (59), Expect = 0.58
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 16 FRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYV 59
F S ++ +HR++ +L++ I+ + Y+Y D + RS++
Sbjct: 140 FDSFLQSLWSLSLQHRQLSSLILRGIMEDLYQYDDPVASLRSHI 183
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 1.8
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 4 RVIPIRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYE-- 61
RV+P D +CLFR++S + + E+R +V + +++N Y I+G S Y
Sbjct: 138 RVMP--DDNSCLFRALSKPLGFSPY---ELREIVANQVLSNPDIYSTAILGKPSIEYASW 192
Query: 62 IRNATDY 68
IR T +
Sbjct: 193 IRKETSW 199
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 2.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 48 YKDFIVGDRSYVYEIRNATDYSRIMSRDGEFAGHAELHCVSELFKEY 94
YK I+ +Y R D I+ RD F GH +L + + EY
Sbjct: 382 YKKRIINHENY----RPLMDDIEILLRDQSFVGHPKLEHLERIVTEY 424
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 41 IVANWYRYKDFIVGDRSYVYEI 62
+V WYR + ++G+R Y I
Sbjct: 215 VVTRWYRSPELLLGERRYTTAI 236
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 16 FRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATD 67
F+S+ H +++DNI+ + +K I+ D Y ++ A D
Sbjct: 186 FKSLMTSYNKVNGEHVSQSRILLDNILRKEWEWKGTIISDWFGTYSLKKAID 237
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 64 NATDYSRIMSRDGEFAGHAELHCVSELFKEYT 95
+AT +S+ + D E A ++L SEL K+YT
Sbjct: 167 SATSHSKSDNLDSESADDSDLADESELSKKYT 198
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 24.6 bits (51), Expect = 5.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 25 GTQERHREIRNLVVDNIVANWYRYKDFIVGDRS 57
GT + +R+ N V+ +V +W D + GDR+
Sbjct: 1059 GTIKLYRDYENEKVE-LVTSWNSLSDLVFGDRN 1090
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 35 NLVVDNIVANWYRYKDFIVGDRSY 58
N + +V WYR D ++G R Y
Sbjct: 156 NTFSNEVVTLWYRAPDVLLGSRVY 179
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 50 DFIVGDRSYVYEIRNATDYSRIM 72
D + RS+V EIR TD R++
Sbjct: 18 DVVAFQRSFVREIRRLTDTERLL 40
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 24 YGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATDYSRIM 72
YG ERHR+I + +I+ Y I+ + E+ DY + M
Sbjct: 1408 YGHIERHRDILVNDLSSIIGESYNRAYGIMVKSQMLSELEEIIDYKKNM 1456
>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 41 IVANWYRYKDFIVGDRSYVYEI---RNATDYSRIMSRDGEFAGHAELHCVSELFK 92
IV WYR + ++G R Y + ++ ++ R F G +E+ + ++F+
Sbjct: 170 IVTLWYRAPEVLLGSRHYSTGVDIWSVGCIFAEMIRRSPLFPGDSEIDEIFKIFQ 224
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.327 0.142 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,043
Number of Sequences: 5004
Number of extensions: 24238
Number of successful extensions: 65
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 14
length of query: 135
length of database: 2,362,478
effective HSP length: 66
effective length of query: 69
effective length of database: 2,032,214
effective search space: 140222766
effective search space used: 140222766
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 49 (23.8 bits)
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