Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002084-TA|BGIBMGA002084-PA|IPR003323|Ovarian tumour,
otubain
(135 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 50 8e-07
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 40 7e-04
02_01_0511 - 3706123-3706166,3706436-3706492,3706734-3706818,370... 40 7e-04
04_03_0814 + 19943150-19943268,19944103-19944157,19944263-199443... 40 0.001
03_06_0761 - 36072849-36072895,36072987-36073043,36073280-360733... 38 0.002
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 37 0.005
02_05_1242 - 35197944-35198118,35198276-35198332,35198780-351988... 37 0.005
02_01_0484 + 3471527-3471591,3471679-3471724,3472468-3472576,347... 33 0.060
01_06_1690 - 39210085-39210162,39210287-39210431,39210507-392106... 32 0.14
08_02_1185 + 25016146-25016422,25017201-25017443,25017551-250176... 29 1.3
06_03_1071 + 27360824-27360994,27361264-27361337,27361431-273614... 29 1.7
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 28 3.0
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673... 27 5.2
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 27 6.8
08_01_0800 - 7738035-7738381,7739951-7740521 27 6.8
06_03_0397 + 20370146-20370256,20371223-20371312,20371411-203714... 26 9.0
05_04_0069 - 17639386-17641380 26 9.0
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 49.6 bits (113), Expect = 8e-07
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 4 RVIPIRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIR 63
++I + DGNC FR++ + G +E H + R ++V I + ++ FI + +
Sbjct: 14 KIIEVSADGNCFFRAMGDQLEGNEEEHMKYRAMIVQYIKEHRVDFEPFIEDEEPF----- 68
Query: 64 NATDYSRIMSRDGEFAGHAELHCVSELFKEYTFKVHRLGCSR 105
Y M DG +AGH EL S + K +H L R
Sbjct: 69 --EKYCDSMLEDGTWAGHMELQAAS-ILKRKNICIHMLNSPR 107
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 39.9 bits (89), Expect = 7e-04
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 6 IPIRGDGNCL------FRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYV 59
+ ++GD NC FR++S +Y T E HR +R VV + + Y + G
Sbjct: 450 VKVKGDRNCQHVSFTQFRALSDQMYHTTEHHRFVRQQVVKQLES----YPEIYAG----- 500
Query: 60 YEIRNATDYSRIMSRDGEFAGHAELHCVSELFKEYTFKVHRLGCSRTTDY 109
Y + +Y + M+ DGE+ H L ++L Y K+ L R T Y
Sbjct: 501 YVPMDYREYLKKMTEDGEWGDHVTLQAAADL---YGVKITLLTSCRDTFY 547
>02_01_0511 -
3706123-3706166,3706436-3706492,3706734-3706818,
3707424-3707472,3707566-3707639,3707775-3707849,
3708186-3708240,3708318-3708391,3708607-3708753,
3709419-3709493,3709527-3709648,3709749-3709929
Length = 345
Score = 39.9 bits (89), Expect = 7e-04
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 8 IRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATD 67
I GDGNC FR+++ ++ + H+ +R VV + Y+ ++ + Y++
Sbjct: 211 IEGDGNCQFRALADQIFRNPDYHKHVRKSVVKQLKEFRKHYEGYVPME----YKV----- 261
Query: 68 YSRIMSRDGEFAGHAELHCVSELF 91
Y + M R GE+ H L ++ F
Sbjct: 262 YLKKMKRSGEWGDHVTLQAAADRF 285
>04_03_0814 +
19943150-19943268,19944103-19944157,19944263-19944337,
19944590-19944663,19944761-19944809,19945039-19945119
Length = 150
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 6 IPIRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNA 65
+ + GDGNC FR++S +Y + + H+ +R +V + A Y+ ++ Y +
Sbjct: 49 VRVSGDGNCQFRALSDQLYRSPDYHKHVRKEIVKQLKACNSLYEGYV--PMKYKH----- 101
Query: 66 TDYSRIMSRDGEFAGHAELHCVSELFKEYTFKV 98
Y + M + GE+ H L ++ K TF +
Sbjct: 102 --YCKKMKKSGEWGDHVTLQAAAD--KHLTFYI 130
>03_06_0761 -
36072849-36072895,36072987-36073043,36073280-36073364,
36073911-36073992,36074050-36074123,36074207-36074299,
36074358-36074412,36074583-36074656,36076319-36076441
Length = 229
Score = 38.3 bits (85), Expect = 0.002
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 6 IPIRGDGNCL------FRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGD-RSY 58
+ + GDGNC FR++S Y T E HR +R +V + + Y ++ D R Y
Sbjct: 75 LKVEGDGNCQHVSYTQFRALSDQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREY 134
Query: 59 VYE-IRNATDYSRIMSRDGEFAGHAELHCVSELFKEYTFKVHRLGCSRTTDY 109
+ + I++ + +R+GE+ H L ++ Y K+ L R T Y
Sbjct: 135 LKKMIKHFHFVATKSTRNGEWGDHVTLQAAAD---SYGVKIFILTSFRDTCY 183
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 11 DGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATDYSR 70
DGNCLFR+++ VYG E + R + VD + + F+ T Y R
Sbjct: 257 DGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMT---------EGFTSYCR 307
Query: 71 IMSRDGEFAGHAELHCVSELF 91
RD + + E+ +E++
Sbjct: 308 RKRRDKVYGNNMEIQAFAEMY 328
>02_05_1242 -
35197944-35198118,35198276-35198332,35198780-35198853,
35198954-35199028,35199295-35199349,35199574-35199647,
35200446-35200579,35200660-35200746,35200838-35200967
Length = 286
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 8 IRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFI 52
++GDGNC FR++S +Y + + H +R ++ + +N Y ++
Sbjct: 153 VKGDGNCQFRALSDQLYQSPDHHEFVRQQIMSQLKSNRDAYDGYV 197
>02_01_0484 +
3471527-3471591,3471679-3471724,3472468-3472576,
3473023-3473114,3473196-3473258,3473346-3473464,
3473752-3473827,3473925-3473981
Length = 208
Score = 33.5 bits (73), Expect = 0.060
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 3 KRVIPIRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVY 60
+RVIP D +CLF ++ Y + + + E+R ++ + ++ +Y + +G + Y
Sbjct: 7 RRVIP--SDNSCLFNAVGYVMEHNRNKASELRQVIAAAVASDPAKYSEVFLGKPNEAY 62
>01_06_1690 -
39210085-39210162,39210287-39210431,39210507-39210605,
39210903-39210943,39211031-39211152,39211623-39211721,
39213500-39213528,39214038-39214060
Length = 211
Score = 32.3 bits (70), Expect = 0.14
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 8 IRGDGNCLFRSISY--CV-YGTQ--------ERHREIRNLVVDNIVANWYRYKDFIVGD- 55
I GDG CLFRS++Y C+ G Q E E+R+ V D V + F+ GD
Sbjct: 52 ITGDGRCLFRSVAYGACLRRGKQSPSDSIQKELADELRSKVADEFVRRRGDTEWFLEGDF 111
Query: 56 RSYVYEIR 63
SYV +IR
Sbjct: 112 ESYVRQIR 119
>08_02_1185 +
25016146-25016422,25017201-25017443,25017551-25017672,
25017760-25017800,25017904-25018002,25018476-25018692
Length = 332
Score = 29.1 bits (62), Expect = 1.3
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 5 VIPIRGDGNCLFRSISY--CVYG-----TQERHR----EIRNLVVDNIVANWYRYKDFIV 53
V I GDG CLFRS+ + C+ ++ R E+R +V D V + FI
Sbjct: 172 VTGIPGDGRCLFRSVIHGACIRAGRPIPNEDLQRKLADELRAMVADEFVKRREESEWFIE 231
Query: 54 GD-RSYVYEIRN 64
GD +YV IR+
Sbjct: 232 GDFDTYVSHIRH 243
>06_03_1071 +
27360824-27360994,27361264-27361337,27361431-27361485,
27361788-27361838,27361935-27362008,27362086-27362134,
27362620-27362704,27362812-27362868,27363001-27363044
Length = 219
Score = 28.7 bits (61), Expect = 1.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 8 IRGDGNCLFRSISYCVYGTQERHREIR 34
I GDGNC FR+++ ++ + H+ ++
Sbjct: 93 IEGDGNCQFRALADQIFRNPDYHKHLK 119
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 52 IVGDRSYVYEIRNATDYSRIMSRDGEFAGHAELHCVSELFKEYTFKVHRLGCSRTTDYG 110
I+G R Y Y++ N T + ++S + GH H S V RLG + T +G
Sbjct: 189 IIGARWYAYDVPNGTLDTEVLS-PRDVHGHG-THTASTAGGNIVHNVSRLGLAAGTAHG 245
>02_04_0083 +
19566476-19566539,19566781-19567006,19567206-19567389,
19569483-19569582,19570015-19570122,19570373-19570452,
19570566-19570644,19570774-19570832,19570938-19571006,
19571577-19571690,19571772-19571840,19572340-19572361,
19572455-19572522,19573630-19573715,19574220-19574349,
19575032-19575133,19575211-19575279
Length = 542
Score = 27.1 bits (57), Expect = 5.2
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 33 IRNLVVDNIVANWYRYKD 50
I +++D+I+ NW+R +D
Sbjct: 518 INQIIIDSIIVNWWRQRD 535
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 5 VIPIRGDGNCLFRSISYCVY 24
V I GDG CLFRSI + Y
Sbjct: 835 VTGICGDGRCLFRSIVHGAY 854
>08_01_0800 - 7738035-7738381,7739951-7740521
Length = 305
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 97 KVHRLGCSRTTDYGRGM 113
KV LGC+R +Y RGM
Sbjct: 266 KVQYLGCNRLNEYNRGM 282
>06_03_0397 +
20370146-20370256,20371223-20371312,20371411-20371470,
20371553-20371825,20371917-20371991,20372074-20372130,
20372820-20372960,20373066-20373116,20373194-20373289,
20373482-20373565,20375739-20375840,20376260-20376331
Length = 403
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 8 IRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYR----YKDF-----IVGDRSY 58
+R +C S+ +C + T R NLV++ + + YR YKD ++ + Y
Sbjct: 116 MRSMDHCNVISLKHCFFSTTSRDELFLNLVMEFVPESLYRVLKHYKDMKQRMPLIYVKLY 175
Query: 59 VYEIRNATDY 68
+Y+I Y
Sbjct: 176 MYQIFRGLAY 185
>05_04_0069 - 17639386-17641380
Length = 664
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 79 AGHAELHCVSELFKEYTFKVHRLGCSRTTDY 109
+ H + ++E K T ++ RLG + +TDY
Sbjct: 549 SSHPMMAAITEKLKHLTMEMRRLGFAPSTDY 579
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.327 0.142 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,002,470
Number of Sequences: 37544
Number of extensions: 151097
Number of successful extensions: 376
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 17
length of query: 135
length of database: 14,793,348
effective HSP length: 75
effective length of query: 60
effective length of database: 11,977,548
effective search space: 718652880
effective search space used: 718652880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -