Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002084-TA|BGIBMGA002084-PA|IPR003323|Ovarian tumour,
otubain
(135 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24) 48 2e-06
SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19) 43 8e-05
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18) 32 0.19
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 31 0.43
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0) 27 5.3
SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9) 26 9.3
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0) 26 9.3
>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
Length = 1142
Score = 48.4 bits (110), Expect = 2e-06
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 7 PIRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGD-RSYVYEIRNA 65
PI DG+CLFR++S VY Q RH ++R + + N ++++F+ G ++++++N
Sbjct: 40 PIAKDGSCLFRAVSEQVYNCQARHLDVRRDCIQFMSRNREQFEEFVEGPFDHHLHQLQNP 99
Query: 66 TDYSRIMSRDGEFAGHAELHCVSELFKE--YTFKVHRLGCSRTTDYGRGMITKHLLFSGY 123
E+AG E+ ++ ++K+ ++ ++ TDYG K + Y
Sbjct: 100 K----------EWAGQVEITAIAMMYKKDFVVYQDINSAPTKVTDYG----FKDKILLCY 145
Query: 124 MDAGHYSVL 132
+ HY +
Sbjct: 146 SNGNHYDAV 154
>SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)
Length = 728
Score = 43.2 bits (97), Expect = 8e-05
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 6 IPIRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNA 65
+ + G G+C F+S+S+ +YG +H EIR L V + N R+ + I+ D S+
Sbjct: 534 LDVGGGGDCFFKSVSHQLYGNSNKHAEIRALGVRYLKDNPERFIESII-DSSW------- 585
Query: 66 TDYSRIMSRDGEFAGHAELHCVSELFKEYTFKVH 99
+ Y MS G +A H + V++ + K+H
Sbjct: 586 SQYLTNMSLQGTWANHIIIQAVADAM---SLKIH 616
>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
Length = 1311
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 1 MSKRVIPIR--GDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRY----KDFI 52
M +R++PI GDG+CL ++S + G + +R + N N +Y KDFI
Sbjct: 169 MEERLVPIHVDGDGHCLVHAVSRALIGREIFWHALRTNLSSNFQQNLAKYRALFKDFI 226
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 30.7 bits (66), Expect = 0.43
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 5 VIPIR--GDGNCLFRSISYCVYGTQERHREIRNLVVDNIV 42
V+P+ GDGNCL + S ++ +R++ +R V D ++
Sbjct: 98 VVPVLTLGDGNCLMHAASIGMWAVSDRYQVLRKAVYDVMI 137
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 27 QERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATDYSRIMSRDGEFAGHAELHC 86
QE +R R D + R + + D SY R+ DY R SRD E G +
Sbjct: 500 QEANRSNRFSERDGEFSRRQREPEAMARDNSYPDRARSDGDYDRRGSRDNETRGAKTVED 559
Query: 87 VSELF-KEYTFKVHRLGCSRTTDYGRGMITK 116
++ +F+ R +R DY RG K
Sbjct: 560 YPRSRPRDESFERGRPRDNRDDDYSRGRENK 590
>SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 RVIPIRGDGNCLFRSISYCVYGTQERHREIRNLVV 38
++ I GDGNCLFR++ + G H + R V
Sbjct: 181 KIKDIMGDGNCLFRALGDQLNGDHTSHLKHRKETV 215
>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 3 KRVIPIR--GDGNCLFRSISYCVYGTQERHREIRNLVVDNIVAN 44
+R++P+ GDGNCL + S ++G +R +R + +V +
Sbjct: 148 QRLVPLATVGDGNCLLHAASLGMWGFHDRLLTLRKALFRTLVGD 191
>SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)
Length = 1025
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 10 GDGNCLFRSISYCVYGTQERHREIRNLVVDN 40
G G+ L R ++ G QE H +++NL+ N
Sbjct: 190 GGGDSLSRKVTLDQRGVQEDHPDVKNLLAPN 220
>SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9)
Length = 326
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 44 NWYR-YKDFIVGDRSYVYEIRNATDYSRIMSRDGEFAGHAEL 84
N YR YK+ + D +Y+++N T S+++ + H ++
Sbjct: 193 NLYREYKEDMEKDACEIYDVKNITSLSKLLEGWNHYDPHGKI 234
>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
Length = 465
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 13 NCLFRSISYCV-YGTQERHREIRNLVVDNIV 42
N L+R I + G + +REI N+VV NIV
Sbjct: 338 NLLYRCIVVKITLGRTDLYREIENIVVSNIV 368
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.327 0.142 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,643,672
Number of Sequences: 59808
Number of extensions: 173564
Number of successful extensions: 342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 10
length of query: 135
length of database: 16,821,457
effective HSP length: 75
effective length of query: 60
effective length of database: 12,335,857
effective search space: 740151420
effective search space used: 740151420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)
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