Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002084-TA|BGIBMGA002084-PA|IPR003323|Ovarian tumour,
otubain
(135 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038604-1|AAB92011.4| 436|Caenorhabditis elegans Hypothetical ... 53 6e-08
AL032631-12|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 44 3e-05
Z74033-5|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 36 0.008
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 36 0.008
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 34 0.030
Z68131-1|CAA92217.1| 467|Caenorhabditis elegans Hypothetical pr... 31 0.38
Z93387-1|CAB07651.1| 376|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z92797-4|CAB07238.3| 478|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z92797-3|CAB07237.2| 445|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z83118-3|CAB05577.3| 478|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z83118-2|CAB05576.2| 445|Caenorhabditis elegans Hypothetical pr... 28 2.6
AC006792-1|AAF60741.2| 642|Caenorhabditis elegans Hypothetical ... 28 2.6
Z78059-2|CAH04726.2| 538|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 27 3.5
U56965-9|AAB52662.2| 265|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical pr... 27 4.6
X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein. 27 4.6
Z81130-7|CAE17967.1| 199|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z81039-7|CAB02772.1| 284|Caenorhabditis elegans Hypothetical pr... 26 8.1
>AF038604-1|AAB92011.4| 436|Caenorhabditis elegans Hypothetical
protein B0546.2 protein.
Length = 436
Score = 53.2 bits (122), Expect = 6e-08
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 10 GDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATDYS 69
GDG C+FRSI+ +YG QE H +IR L +D + N +K+FI N +Y
Sbjct: 142 GDGACMFRSIAEQIYGDQEMHGQIRRLCMDYMSNNRDHFKEFIT---------ENFENYI 192
Query: 70 RIMSRDGEFAGHAELHCVSELF 91
+ + H EL +SE+F
Sbjct: 193 QRKREENVHGNHVELQAISEMF 214
>AL032631-12|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 44.4 bits (100), Expect = 3e-05
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 4 RVIPIRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIR 63
RV I DGNC +R+IS+C+ G+Q+ H+ +R AN+ R D + D+ Y ++
Sbjct: 714 RVKGIESDGNCFYRAISWCLTGSQKYHKALR-----IATANYLR-NDIAIVDK-YCHKTD 766
Query: 64 NATDYSRIMSRDGEFAGHAELHCVSELFKE--YTF 96
+ T Y + + DG +A + E+ ++ L YTF
Sbjct: 767 HKT-YVQQVEGDGWWATNVEICVMANLLNVNIYTF 800
>Z74033-5|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 36.3 bits (80), Expect = 0.008
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 8 IRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATD 67
I DGNC +R+IS+ + G Q H R V ++ N +K + + +YE
Sbjct: 601 ITPDGNCFYRAISWWITGVQSHHMIFREAVGKHLKKNELMFKKYC---HNEIYE-----K 652
Query: 68 YSRIMSRDGEFAGHAELHCVSEL 90
Y RDG +A E+ ++ +
Sbjct: 653 YVENAMRDGVWATTCEIFAMANM 675
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 36.3 bits (80), Expect = 0.008
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 8 IRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATD 67
I DGNC +R+IS+ + G Q H R V ++ N +K + + +YE
Sbjct: 601 ITPDGNCFYRAISWWITGVQSHHMIFREAVGKHLKKNELMFKKYC---HNEIYE-----K 652
Query: 68 YSRIMSRDGEFAGHAELHCVSEL 90
Y RDG +A E+ ++ +
Sbjct: 653 YVENAMRDGVWATTCEIFAMANM 675
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 34.3 bits (75), Expect = 0.030
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 8 IRGDGNCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATD 67
I DGNC +R++S+ + G + H R V ++ N ++K + +YE
Sbjct: 328 IEADGNCFYRAVSWWLTGVESHHMIFREAVGKHLKKNEPKFKKYC---HDEIYE-----K 379
Query: 68 YSRIMSRDGEFAGHAELHCVSEL 90
Y + R+G +A E+ ++ +
Sbjct: 380 YVDNVMREGVWASTCEIFAMANM 402
>Z68131-1|CAA92217.1| 467|Caenorhabditis elegans Hypothetical
protein B0395.2 protein.
Length = 467
Score = 30.7 bits (66), Expect = 0.38
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 42 VANWYRYKDFIVGDRSYVYEIRNATDYSRIMSRDGEFAGHAELHCVSELFKEYTFKV 98
+A +YR + +V D Y Y R+ Y+ R G+ A + +S +F EY F V
Sbjct: 327 MAEYYRNWNLVVHDWLYAYVFRDLAAYN--PGRKGQRAAQMAVFFLSAVFHEYWFGV 381
>Z93387-1|CAB07651.1| 376|Caenorhabditis elegans Hypothetical
protein T02E9.1 protein.
Length = 376
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 16 FRSISYCVYGTQERHREIRNLVVDNIVANW 45
F+S Y V ERH IR + +D + W
Sbjct: 169 FKSGQYFVSAKNERHEVIRQMCIDGMALEW 198
>Z92797-4|CAB07238.3| 478|Caenorhabditis elegans Hypothetical
protein H25P06.2b protein.
Length = 478
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 34 RNLVVDNIVANWYRYKDFIVGDRSY 58
R L + +V WYR + ++GDR Y
Sbjct: 252 RPLYTNRVVTLWYRPPELLLGDRQY 276
>Z92797-3|CAB07237.2| 445|Caenorhabditis elegans Hypothetical
protein H25P06.2a protein.
Length = 445
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 34 RNLVVDNIVANWYRYKDFIVGDRSY 58
R L + +V WYR + ++GDR Y
Sbjct: 252 RPLYTNRVVTLWYRPPELLLGDRQY 276
>Z83118-3|CAB05577.3| 478|Caenorhabditis elegans Hypothetical
protein H25P06.2b protein.
Length = 478
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 34 RNLVVDNIVANWYRYKDFIVGDRSY 58
R L + +V WYR + ++GDR Y
Sbjct: 252 RPLYTNRVVTLWYRPPELLLGDRQY 276
>Z83118-2|CAB05576.2| 445|Caenorhabditis elegans Hypothetical
protein H25P06.2a protein.
Length = 445
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 34 RNLVVDNIVANWYRYKDFIVGDRSY 58
R L + +V WYR + ++GDR Y
Sbjct: 252 RPLYTNRVVTLWYRPPELLLGDRQY 276
>AC006792-1|AAF60741.2| 642|Caenorhabditis elegans Hypothetical
protein Y50C1A.1 protein.
Length = 642
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 10 GDGNCLFRSISYCVYGTQERHREIRNLVVD 39
GDGNCL + S ++G +R +R + +
Sbjct: 131 GDGNCLLHAASLGMWGVHDRQLSLRETLYE 160
>Z78059-2|CAH04726.2| 538|Caenorhabditis elegans Hypothetical
protein C34B4.4 protein.
Length = 538
Score = 27.5 bits (58), Expect = 3.5
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 51 FIVGDRSYVYEIRNAT-------DYSRIMSR----DGEFAGHAELHCVSELFK---EYTF 96
F G +YV+ + +T +Y +IMS D H ++ ++++ EY F
Sbjct: 151 FTSGFEAYVFPTKYSTPNTWHVDNYKKIMSNESYVDENSTCHGDMCFIAKVAADAGEYDF 210
Query: 97 KVHRLGCSRTTDYGRGMITKHLLFSGYMDAGHYSVLEF 134
V+ GC T ++G I F G H L+F
Sbjct: 211 DVYYKGCISTNEHGNNSI--QACFIGIKKPSHTCTLDF 246
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 13 NCLFRSISYCVYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYE 61
N FR + + E H E ++ N+VA R+ D+I+ D YE
Sbjct: 261 NPKFRVVMNIAMSSPEHHSEAA-WIISNVVAGAPRHVDYIMDDPDAFYE 308
>U56965-9|AAB52662.2| 265|Caenorhabditis elegans Hypothetical
protein C15H9.2 protein.
Length = 265
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 6 IPIRGDGNCLFRSISYCVYGTQERHREIRNLVVD 39
I ++G +C FR++ C+YG R R +V+
Sbjct: 168 IELKGISSCSFRNLLNCIYGYPSVFRITRGNIVE 201
>Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical
protein T02C12.1 protein.
Length = 1017
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 23 VYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNA 65
V G Q+R R R L V I+ + RYK +SY++++ NA
Sbjct: 714 VRGVQQRERYRRMLAVRKIIGAYRRYK-----LKSYIWQLINA 751
>X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.
Length = 1017
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 23 VYGTQERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNA 65
V G Q+R R R L V I+ + RYK +SY++++ NA
Sbjct: 714 VRGVQQRERYRRMLAVRKIIGAYRRYK-----LKSYIWQLINA 751
>Z81130-7|CAE17967.1| 199|Caenorhabditis elegans Hypothetical
protein T23G11.10 protein.
Length = 199
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 28 ERHREIRNLVVDNIVANWYRYKDFIVGDRSYVYEIRNATDYSRIMSRDGEFAGHAELHCV 87
E+ + +R + + V NW+ + DFI G + IR + R+M + ++ +
Sbjct: 56 EKQKNVRRRHLMSTVQNWHMHDDFIAGLKG----IRKEEECKRMMFSEKCEYSKPVVNAL 111
Query: 88 SELFKEYTFKVHR 100
+E KE +V R
Sbjct: 112 NEYKKERIEEVKR 124
>Z81039-7|CAB02772.1| 284|Caenorhabditis elegans Hypothetical
protein C25D7.8 protein.
Length = 284
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 8 IRGDGNCLFRSI 19
IRGDGNC +R+I
Sbjct: 82 IRGDGNCFYRAI 93
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.327 0.142 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,245
Number of Sequences: 27539
Number of extensions: 130508
Number of successful extensions: 346
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 19
length of query: 135
length of database: 12,573,161
effective HSP length: 74
effective length of query: 61
effective length of database: 10,535,275
effective search space: 642651775
effective search space used: 642651775
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -