Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002083-TA|BGIBMGA002083-PA|IPR004000|Actin/actin-like
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 248 1e-66
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 192 9e-50
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 149 8e-37
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 132 8e-32
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 81 2e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 63 7e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 62 9e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 58 2e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 3e-05
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 29 1.0
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 27 4.2
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 5.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 5.6
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 5.6
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 26 7.4
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 26 7.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 9.8
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 26 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 248 bits (606), Expect = 1e-66
Identities = 136/377 (36%), Positives = 203/377 (53%), Gaps = 14/377 (3%)
Query: 1 MSFEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHG-SYGRQSYDVYIGDDAV 59
M E A+VIDNGS KAGFA D+ P ++F ++VGRP + HG G D Y+GD+A
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH-HGIMVGMGQKDSYVGDEAQ 59
Query: 60 SKIEDLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXX 119
SK L L P+E G + +WD+ME+IWHH FY EL+VAPE+ +L +P
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 120 XXXXXXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETR 179
T N PA + QAVL++Y SG TTGI +D G T P+Y+G + +A
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLD 179
Query: 180 LAGSQVSEYLKLQLEERGIDLGVNT-ATVIENIKRDCLYVTKD------ASMTRSDYEKY 232
LAG +++YL L ERG ++ +IK YV D + S EK
Sbjct: 180 LAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKS 239
Query: 233 HRTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDA 292
+ DG ++ + E F A E +FQP +G + + +A N+++ CD ++R DLY
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPS-ALGLEN--AGIHEATYNSIMKCDVDIRKDLYGN 296
Query: 293 IVLCGGLAMIPGLQERLAMEVENL--TQTPVNVIGSPEAYAVAWLGGATFAGLPDAKKMW 350
+V+ GG M PG+ +R+ E++ L + V ++ PE W+GG+ A L ++MW
Sbjct: 297 VVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMW 356
Query: 351 VTKKQFEEYGEKIVRNK 367
++K++++E G IV K
Sbjct: 357 ISKQEYDESGPGIVYRK 373
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 192 bits (467), Expect = 9e-50
Identities = 117/377 (31%), Positives = 194/377 (51%), Gaps = 15/377 (3%)
Query: 3 FEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVSKI 62
F+ + IDNGS IKAGFA D+ P +F T VGR + D+++G +A +
Sbjct: 7 FDNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66
Query: 63 EDLELNKPVEKGRIVHWDNMERIWHHVFY-KELKVAPEDRAVVLACTTTSPMXXXXXXXX 121
L++ +P+E+G I +W +ME IW +++ ++L PE+ ++L + +
Sbjct: 67 GLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAE 126
Query: 122 XXXXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLA 181
TLNVPAL Q VLA+Y S TTGI ++ G T P+Y G I A + +
Sbjct: 127 YFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIG 186
Query: 182 GSQVSEYLKLQLEERGIDLGVNTA--TVIENIKRDCLYVTKDASMTRSDYEKY------H 233
G V++YL+LQL + G +L V++A ++ IK C YV D + ++ +
Sbjct: 187 GRDVTDYLQLQLRKSGHEL-VSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTY 245
Query: 234 RTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAI 293
+ D + + E F A E++F P++ MG + L + + ++L+ D +LR LY I
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEM-MGSEASGLHI--QLFKSILLSDIDLRSTLYSNI 302
Query: 294 VLCGGLAMIPGLQERLAMEVENLT--QTPVNVIGSPEAYAVAWLGGATFAGLPDAKKMWV 351
VL GG ++ G ER E+ ++ + V + SPE AWLGG+ A L +++ +
Sbjct: 303 VLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLI 362
Query: 352 TKKQFEEYGEKIVRNKF 368
T ++++ I R +F
Sbjct: 363 TSEEYKNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 149 bits (360), Expect = 8e-37
Identities = 107/381 (28%), Positives = 177/381 (46%), Gaps = 28/381 (7%)
Query: 4 EKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDY-LHGSYGR-QSYDVYIGDDAVSK 61
E +V+DNG+ +K G+A DN P F ++VGRP G Q DV +GD+A +
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 62 IEDLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXX 121
L++ P+E G I ++ M ++W + F+++LK+ P R ++L +P+
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 122 XXXXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLA 181
+ + QAVL++Y G ++G+ VD G T + PVY+ + + +A
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 182 GSQVSEYLKLQLEERGIDLGVNTA--TVIENIKRDCLYVTKDASMTRSDYE------KYH 233
G + YL L +G TA + +K YV+ D + E + +
Sbjct: 182 GRDATRYLISLLLRKGYAFN-RTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNY 240
Query: 234 RTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAI 293
DG ++ V E + E +FQP LV ++ L + + + + D ++R LY AI
Sbjct: 241 TLPDGRVIKVGSERYECPECLFQPHLVGSEQPG---LSEFIFDTIQAADVDIRKYLYRAI 297
Query: 294 VLCGGLAMIPGLQERLAMEVENL----------TQTP---VNVIGSPEAYAVAWLGGATF 340
VL GG +M GL RL E++ L + P V + +P ++GGA
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 341 AG-LPDAKKMWVTKKQFEEYG 360
A + MWV+K ++EEYG
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 132 bits (319), Expect = 8e-32
Identities = 126/423 (29%), Positives = 180/423 (42%), Gaps = 66/423 (15%)
Query: 2 SFEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVG--------------RPDYL------ 41
SF P +++DNG+ K G+A ++ P +F TV+ +P Y+
Sbjct: 3 SFNVP-IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSG 61
Query: 42 HGSYGR--QSYDVYIGDDAVSKIE-DLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAP 98
H S R + D +IG+DA+ K L+ P+ G+I +WD+MER W +K L+ P
Sbjct: 62 HLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP 121
Query: 99 EDRAVVLACTTTSPMXXXXXXXXXXXXTLNVPALCIQPQAVLAVYGSGYT--------TG 150
ED +L +P + N L I QAVLA+ S + TG
Sbjct: 122 EDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTG 181
Query: 151 ISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQVSEYLKLQLEERG-IDLGVNTATVIE 209
VD G T + PV +G I + LAG V+ +++ L +R D + TA E
Sbjct: 182 TVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTA---E 238
Query: 210 NIKRDCLYVTKD--ASMTRSD-----YEKYHR---TADGDMVHVCREAFLAAELIFQPDL 259
IK +C YV D +R D Y KY T + V E FLA E+ F P++
Sbjct: 239 RIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEI 298
Query: 260 VMGQKTDFL-PLPDAVVNAVLVCDAELRPDLYDAIVLCGGLAMIPGLQERLAMEVENLTQ 318
+DFL PLP+ V N V ++R LY IVL GG + RL +++ +
Sbjct: 299 A---SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVD 355
Query: 319 ----------------TPVNVIGSPEAYAVAWLGGATFAGLPDAKKMWVTKKQFEEYGEK 362
VNVI W GG+ A P+ TK +EEYG
Sbjct: 356 ERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGAS 415
Query: 363 IVR 365
I R
Sbjct: 416 IAR 418
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 81.0 bits (191), Expect = 2e-16
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 214 DCLYVTKDASMTRSDYEKYHRTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLP---- 269
D L D + S K DG +E F +E++F P + + P
Sbjct: 262 DVLDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGS 321
Query: 270 --LPDAVVNAVLVCDAELRPDLYDAIVLCGGLAMIPGLQERLAMEVENL-TQTPVNVIGS 326
L + V ++L CD+ELR L + IV+ GG ++IPGL ERL EV+ L T + +NV +
Sbjct: 322 VGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTA 381
Query: 327 PEAYAVA---WLGGATFAGLPDAKKMWVTKKQFEEYG 360
A A + W GG+ A L + + +WV+K++++E G
Sbjct: 382 ETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 66.9 bits (156), Expect = 4e-12
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Query: 4 EKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVG-RPDYLHGSYGRQSYDVYIGDDAVSKI 62
E P++VID GS + G+A + P++I + G R D GR Y V + I
Sbjct: 9 EIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVT----GRNKY-VVDELQIHAPI 63
Query: 63 EDLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXX 122
+E+ G I W++ W ++L+V P + A+++ + +P
Sbjct: 64 PGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEA 123
Query: 123 XXXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAG 182
L+VPA + QAV + + +T + VD+G D VTPV G I + LAG
Sbjct: 124 AFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAG 183
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 3e-11
Identities = 42/198 (21%), Positives = 88/198 (44%), Gaps = 10/198 (5%)
Query: 4 EKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVSKIE 63
E A+VID GS + GF+ ++ P + + G S GR+ + G++ + K
Sbjct: 10 EVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE-----FSDGRRLF----GEEYIYKSN 60
Query: 64 D-LELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXX 122
+E+ + G + +WD +W + ++LK P + +++ +P
Sbjct: 61 PGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 123 XXXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAG 182
+L PA + Q A + SG T VD+G + + V+ +Y G ++ + +G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSG 180
Query: 183 SQVSEYLKLQLEERGIDL 200
+ +++ L L ++ ++
Sbjct: 181 NAINDILAQTLRDKNFEV 198
Score = 60.5 bits (140), Expect = 4e-10
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 252 ELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLCGGLAMIPGLQERLAM 311
E+ Q V + L +P N + CD ++R L + +++CGG +++ G RL
Sbjct: 309 EVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQN 368
Query: 312 EVENL---TQTPVNVIGS-PEAYAVAWLGGATFAGLPDAKKMWVTKKQFEEYG 360
E+ L ++ ++ G E +WLGG+ + L ++W++++++EE+G
Sbjct: 369 ELSKLYPGSRLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHG 421
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.9 bits (146), Expect = 7e-11
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 8/185 (4%)
Query: 8 VVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVSKIEDLEL 67
+VIDNGS+ ++AG+ + P +F +V R Y R S +G+D + ++ +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSR--YRDRKLSRTS--TLVGNDTLIEVGSRSI 82
Query: 68 -NKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXXXXXT 126
P E+ I +WD ME++ + F K L + + + + +P
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 127 LNVPALCIQPQAVLAVYGS--GYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQ 184
N P++ + + Y + ++GI ++LG + V PV G RI GSQ
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
Query: 185 VSEYL 189
S YL
Sbjct: 202 SSSYL 206
Score = 44.4 bits (100), Expect = 3e-05
Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 227 SDYEKYHRTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELR 286
SD++ + A +H+ E E+IF P +V + L + +++ + E +
Sbjct: 576 SDFD-VNDVAQAFQLHLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSL---EEQ 631
Query: 287 PDLYDAIVLCGGLAMIPGLQERLAMEVENL--TQTPVNVIGSPEAYAVAWLGGATFAGLP 344
L +++ GGL +PG++ R+ E+ ++ + +NV + AW G + ++
Sbjct: 632 QKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTE 691
Query: 345 DAKKMWVTKKQFEEYGEKIVRNKFL 369
K VT++++ E G + ++ L
Sbjct: 692 KFKAAKVTREEYLEKGPEYIKEHSL 716
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 62.5 bits (145), Expect = 9e-11
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 69 KPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRA----VVLACTTTSPMXXXXXXXXXXX 124
+P+++GR+V W+ ++ W H++ LK P D V L T +
Sbjct: 112 QPIQRGRVVDWEALKAFWKHLYSLLLK-DPNDTTFRYPVCLVIPTYWSLYDRELATQFFF 170
Query: 125 XTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQ 184
VP I + ++ +Y G G+ +D+GY+ T++TP+ G I A + L G
Sbjct: 171 EECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRY 230
Query: 185 VSEYLKLQLEE 195
++++L+ L E
Sbjct: 231 MTQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 58.0 bits (134), Expect = 2e-09
Identities = 90/412 (21%), Positives = 157/412 (38%), Gaps = 59/412 (14%)
Query: 1 MSFEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVS 60
M +V+DNG+Y+IKAGFA VV P+ L S + +++G++ +
Sbjct: 1 MGLPPKTIVLDNGAYHIKAGFAGGK--------VVEIPNCLTRS--KDGNRLFLGNELAN 50
Query: 61 --KIEDLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPE--DRAVVLA--CTTTSPMX 114
L+ + EKG +VHW +W V + P D +++L T +
Sbjct: 51 CNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIE 110
Query: 115 XXXXXXXXXXXTLNVPALCIQPQAVLAVYGS-------GYTTG-----ISVDLGYDTTEV 162
+ C + + +GS YT + +D GY T +
Sbjct: 111 HNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHI 170
Query: 163 TPVYQGGRIEYAHTETRLAGSQVSEYLKLQLEERGIDLGVNTATVIE----------NIK 212
PV E A + G ++ YLK + R ++ T V E N K
Sbjct: 171 IPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMMEETYIVNEIKESVCYVSQNFK 230
Query: 213 RD---C----------LYVTKDASMTRSDY--EKYHRTADGDMVHVCREAFLAAELIFQP 257
D C Y D S + Y ++ + ++++ E F+ EL+F P
Sbjct: 231 EDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSP 290
Query: 258 DLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLCGGLAMIPGLQERLAMEVENLT 317
+ ++ +P+AV+ +V ++ L + +V GG PG +RL+ E+ +L
Sbjct: 291 SDIEIREAG---IPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLA 347
Query: 318 QT--PVNVIGSPEAYAVAWLGGATFAGLPDAKKMWVTKKQFEEYGEKIVRNK 367
V V + W A+ L +T+ ++ E+G I+ K
Sbjct: 348 PANWEVKVFEPSDPICFPW-KKASHMPLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 3e-05
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 269 PLPDAVVNAVL-VCDAELRPD----LYDAIVLCGGLAMIPG----LQERLAMEVENLTQT 319
PL DA+ ++ CD L + LY +I++ GG PG L+ER+ + N+
Sbjct: 504 PLDDAINQSIFSACDGNLSDEKAKNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPT- 562
Query: 320 PVNVIGSP---EAYAVAWLGGATFAGLPDAKKMWVTKKQFEEYGEKIVRNKFL 369
++VI P +A VAW G + + ++W+ ++ G ++++ K L
Sbjct: 563 -ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYKTL 614
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 1.0
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 252 ELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLCGGLAMIPGLQERLAM 311
E +F+ G LP+ +++ + ++R + IV G L +PG +R
Sbjct: 251 EALFEGSDAGGSDIADQALPNVLLSLYRILPIDIRRIMSKLIVFNGILPSLPGWYQRFQN 310
Query: 312 EVENLTQTPVNVIGSPEAYAVAWLGGAT 339
E+ + V G A +AW G +T
Sbjct: 311 EMTSRGLAIKAVPGQTTADMMAWNGAST 338
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 165 VYQGGRIEYAHTETRLAGSQVSEYLKLQLEERGIDLGVNTATVIENIKR 213
+Y G E+ H + +L + + +K + + NTA VIEN+K+
Sbjct: 82 IYGEGAWEFRHDDFQLHHKDLLDNIKRKAPSKRNLANENTAPVIENLKQ 130
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 43 GSYGRQSYDVYIGDDAVSKIEDLELNKPVEKGRIVHWDNMERI 85
GS+ RQ+Y +Y+G ++ +D+E + W ++ERI
Sbjct: 167 GSFLRQNYTLYVG--GITPTDDIE---EIVSRHFAEWGDIERI 204
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 71 VEKGRIVHWDNMERIWHHVFYKELKVA 97
+EK R+VH + ER +HVFY+ L A
Sbjct: 253 LEKSRVVHQNEFERN-YHVFYQLLSGA 278
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 323 VIGSPEAYAVAWLGGATFAGLPDA 346
V+G+ + YAV + A FAGLP +
Sbjct: 426 VLGAEDVYAVGDIAHAPFAGLPSS 449
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 129 VPALCIQPQAVLAVYGSGY 147
VP +C+ P+ VLA Y S Y
Sbjct: 224 VPIVCVSPKWVLACYSSKY 242
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 52 VYIGDDAVSKIEDLELNKPVEKGRIV 77
V+IG S+IEDL L V KGR V
Sbjct: 354 VFIGSCTNSRIEDLRLAAAVVKGRKV 379
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 212 KRDCLYVTKDASMTRSDYEK 231
K+ L VT+D TR DYEK
Sbjct: 1045 KQQLLLVTEDLRKTREDYEK 1064
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 282 DAELRPDLYDAIVLCGGLAMIPGLQERL 309
D+ L+ D IVL GG IP +QE L
Sbjct: 353 DSNLKKSEIDDIVLVGGSTRIPKVQELL 380
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,554
Number of Sequences: 5004
Number of extensions: 66928
Number of successful extensions: 175
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 27
length of query: 369
length of database: 2,362,478
effective HSP length: 74
effective length of query: 295
effective length of database: 1,992,182
effective search space: 587693690
effective search space used: 587693690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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