Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002083-TA|BGIBMGA002083-PA|IPR004000|Actin/actin-like
(369 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56| Best HMM Match : Actin (HMM E-Value=0) 249 3e-66
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 248 7e-66
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 247 1e-65
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 246 2e-65
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 213 2e-55
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 2e-35
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 4e-32
SB_54| Best HMM Match : Actin (HMM E-Value=0) 103 3e-22
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 97 2e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 66 6e-11
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 60 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 56 6e-08
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-06
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 51 2e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 47 2e-05
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 38 0.017
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 36 0.070
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 30 3.5
SB_1415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 249 bits (609), Expect = 3e-66
Identities = 133/376 (35%), Positives = 201/376 (53%), Gaps = 12/376 (3%)
Query: 1 MSFEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVS 60
M E A+V+DNGS KAGFA D+ P ++F ++VGRP + G D Y+GD+A S
Sbjct: 1 MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 61 KIEDLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXX 120
K L L P+E G + +WD+ME+IWHH FY EL+VAPE+ V+L +P
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 121 XXXXXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRL 180
T N PA+ + QAVL++Y SG TTGI +D G T P+Y+G + +A L
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 181 AGSQVSEYLKLQLEERGIDLGVNT-ATVIENIKRDCLYVTKD------ASMTRSDYEKYH 233
AG +++YL L ERG ++ +IK YV D + + S EK +
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSY 240
Query: 234 RTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAI 293
DG ++ + E F E +FQP +G ++ + + N+++ CD ++R DLY
Sbjct: 241 ELPDGQVITIGNERFRCPEAMFQPSF-LGMES--AGIHETTYNSIMKCDVDIRKDLYANT 297
Query: 294 VLCGGLAMIPGLQERLAMEVENLT--QTPVNVIGSPEAYAVAWLGGATFAGLPDAKKMWV 351
VL GG M PG+ +R+ E+ +L + +I PE W+GG+ A L ++MW+
Sbjct: 298 VLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 352 TKKQFEEYGEKIVRNK 367
+K++++E G IV K
Sbjct: 358 SKQEYDESGPSIVHRK 373
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 248 bits (606), Expect = 7e-66
Identities = 132/373 (35%), Positives = 200/373 (53%), Gaps = 12/373 (3%)
Query: 4 EKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVSKIE 63
E A+V+DNGS KAGFA D+ P ++F ++VGRP + G D Y+GD+A SK
Sbjct: 5 EIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 64 DLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXXX 123
L L P+E G + +WD+ME+IWHH FY EL+VAPE+ V+L +P
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 124 XXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGS 183
T N PA+ + QAVL++Y SG TTGI +D G T P+Y+G + +A LAG
Sbjct: 125 FETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGR 184
Query: 184 QVSEYLKLQLEERGIDLGVNT-ATVIENIKRDCLYVTKD------ASMTRSDYEKYHRTA 236
+++YL L ERG ++ +IK YV D + + S EK +
Sbjct: 185 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKSYELP 244
Query: 237 DGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLC 296
DG ++ + E F E +FQP +G ++ + + N+++ CD ++R DLY VL
Sbjct: 245 DGQVITIGNERFRCPEAMFQPSF-LGMES--AGIHETTYNSIMKCDVDIRKDLYANTVLS 301
Query: 297 GGLAMIPGLQERLAMEVENLT--QTPVNVIGSPEAYAVAWLGGATFAGLPDAKKMWVTKK 354
GG M PG+ +R+ E+ +L + +I PE W+GG+ A L ++MW++K+
Sbjct: 302 GGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 355 QFEEYGEKIVRNK 367
+++E G IV K
Sbjct: 362 EYDESGPSIVHRK 374
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 247 bits (604), Expect = 1e-65
Identities = 132/376 (35%), Positives = 199/376 (52%), Gaps = 12/376 (3%)
Query: 1 MSFEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVS 60
M + A+V+DNGS KAGFA D+ P ++F ++VGRP + G D Y+GD+A S
Sbjct: 1 MEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 61 KIEDLELNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXX 120
K L L P+E G + +WD+ME+IWHH FY EL+VAPE+ V+L +P
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 121 XXXXXTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRL 180
T N PA+ + QAVL++Y SG TTGI +D G T P+Y+G + +A L
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 181 AGSQVSEYLKLQLEERGIDLGVNT-ATVIENIKRDCLYVTKD------ASMTRSDYEKYH 233
AG +++YL L ERG ++ +IK YV D + S EK +
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSY 240
Query: 234 RTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAI 293
DG ++ + E F E +FQP +G ++ + + N+++ CD ++R DLY
Sbjct: 241 ELPDGQVITIGNERFRCPEAMFQPSF-LGMES--AGIHETTYNSIMKCDVDIRKDLYANT 297
Query: 294 VLCGGLAMIPGLQERLAMEVENLT--QTPVNVIGSPEAYAVAWLGGATFAGLPDAKKMWV 351
VL GG M PG+ +R+ E+ L + +I PE W+GG+ A L ++MW+
Sbjct: 298 VLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 352 TKKQFEEYGEKIVRNK 367
+K++++E G IV K
Sbjct: 358 SKQEYDESGPSIVHRK 373
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 246 bits (603), Expect = 2e-65
Identities = 131/370 (35%), Positives = 198/370 (53%), Gaps = 12/370 (3%)
Query: 7 AVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVSKIEDLE 66
A+V+DNGS KAGFA D+ P ++F ++VGRP + G D Y+GD+A SK L
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 67 LNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXXXXXT 126
L P+E G + +WD+ME+IWHH FY EL+VAPE+ V+L +P T
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 127 LNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQVS 186
N PA+ + QAVL++Y SG TTGI +D G T P+Y+G + +A LAG ++
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 187
Query: 187 EYLKLQLEERGIDLGVNT-ATVIENIKRDCLYVTKD------ASMTRSDYEKYHRTADGD 239
+YL L ERG ++ +IK YV D + + S EK + DG
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQ 247
Query: 240 MVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLCGGL 299
++ + E F E +FQP +G ++ + + N+++ CD ++R DLY VL GG
Sbjct: 248 VITIGNERFRCPEAMFQPSF-LGMES--AGIHETTYNSIMKCDVDIRKDLYANTVLSGGS 304
Query: 300 AMIPGLQERLAMEVENLT--QTPVNVIGSPEAYAVAWLGGATFAGLPDAKKMWVTKKQFE 357
M PG+ +R+ E+ L + +I PE W+GG+ A L ++MW++K++++
Sbjct: 305 TMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD 364
Query: 358 EYGEKIVRNK 367
E G IV K
Sbjct: 365 ESGPSIVHRK 374
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 213 bits (520), Expect = 2e-55
Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 25/363 (6%)
Query: 7 AVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVSKIEDLE 66
A+VIDNGS KAGFA D+ P ++F ++VGRP + G D Y+GD+A SK L
Sbjct: 8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 67 LNKPVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXXXXXT 126
L P+E G + +WD+ME+IWHH FY EL+VAPE+ V+L +P T
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 127 LNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQVS 186
N PA+ + QAVL++Y SG TTGI +D G + P+Y+ E ++ T A ++
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYE----ERGYSFTTTAEREIV 183
Query: 187 EYLKLQLEERGIDLGVNTATVIENIKRDCLYVTKDASMTRSDYEKYHRTADGDMVHVCRE 246
+K +L +D T + + S EK + DG ++ + E
Sbjct: 184 RDIKEKLCYVALDFEQEMQT----------------AASSSSIEKSYELPDGQVITIGNE 227
Query: 247 AFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLCGGLAMIPGLQ 306
F E + QP +G ++ + + N+++ CD ++R DLY V+ GG M PGL
Sbjct: 228 RFRCPEALLQPSF-LGMESS--GIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLA 284
Query: 307 ERLAMEVENLTQT--PVNVIGSPEAYAVAWLGGATFAGLPDAKKMWVTKKQFEEYGEKIV 364
+R+ E+ L + + +I PE W+GG+ A L ++MW++K++++E G IV
Sbjct: 285 DRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIV 344
Query: 365 RNK 367
K
Sbjct: 345 HRK 347
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 146 bits (355), Expect = 2e-35
Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 12/251 (4%)
Query: 126 TLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQV 185
T N PA+ + QAVL++Y SG TTGI +D G T P+Y+G + +A LAG +
Sbjct: 89 TFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDL 148
Query: 186 SEYLKLQLEERGIDLGVNT-ATVIENIKRDCLYVTKD------ASMTRSDYEKYHRTADG 238
++YL L ERG ++ +IK YV D + + S EK + DG
Sbjct: 149 TDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDG 208
Query: 239 DMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLCGG 298
++ + E F E +FQP +G ++ + + N+++ CD ++R DLY VL GG
Sbjct: 209 QVITIGNERFRCPEAMFQPSF-LGMES--AGIHETTYNSIMKCDVDIRKDLYANTVLSGG 265
Query: 299 LAMIPGLQERLAMEVENLT--QTPVNVIGSPEAYAVAWLGGATFAGLPDAKKMWVTKKQF 356
M PG+ +R+ E+ L + +I PE W+GG+ A L ++MW++K+++
Sbjct: 266 TTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 325
Query: 357 EEYGEKIVRNK 367
+E G IV K
Sbjct: 326 DESGPAIVHRK 336
Score = 77.4 bits (182), Expect = 2e-14
Identities = 39/90 (43%), Positives = 54/90 (60%)
Query: 1 MSFEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVS 60
M + A+VIDNGS KAGFA D+ P ++F ++VGRP + G D Y+GD+A S
Sbjct: 1 MDDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 61 KIEDLELNKPVEKGRIVHWDNMERIWHHVF 90
K L L P+E G + +WD+ME+I F
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 136 bits (328), Expect = 4e-32
Identities = 94/321 (29%), Positives = 151/321 (47%), Gaps = 17/321 (5%)
Query: 8 VVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSY--GRQSYDVYIGDDAVSKIEDL 65
+V DNG+ +K G+A N P IF ++VGRP + D+ +GD+A L
Sbjct: 9 IVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRYML 68
Query: 66 ELNKPVEKGRIVHWDNMERIWHHVFYK-ELKVAPEDRAVVLACTTTSPMXXXXXXXXXXX 124
E+N P++ G + +WD+M+ +W + F + ++ + P + V+L +PM
Sbjct: 69 EVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEVMF 128
Query: 125 XTLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQ 184
+ I QAVL +Y G TG+ +D G T + PVY+G + + +AG
Sbjct: 129 ENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRD 188
Query: 185 VSEYLKLQLEERGIDLGVNTA--TVIENIKRDCLYV-------TKDASMTRSDYEKYHRT 235
+++YL + RG +TA + +K YV K A T E+Y
Sbjct: 189 ITKYLIKLMLLRGYAFN-HTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQY-TL 246
Query: 236 ADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVL 295
DG +V + E F A E +FQP L+ + + + + + N + D + R + Y IVL
Sbjct: 247 PDGRVVKLSGERFEAPEALFQPHLI---NVEGVGVAELLFNTIQAADIDTRSEFYKHIVL 303
Query: 296 CGGLAMIPGLQERLAMEVENL 316
GG M PGL RL E++ L
Sbjct: 304 SGGSTMYPGLPSRLEREIKQL 324
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 103 bits (246), Expect = 3e-22
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 84 RIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXXXXXTLNVPALCIQPQAVLAVY 143
++W H F +L+V ED V+L +P + NVP + + QAV+A+Y
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 144 GSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQVSEYLKLQLEERGIDL-GV 202
SG TTG D G + PVY G + +A LAG ++ YL+ + ERG
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 203 NTATVIENIKRDCLYVTKD------ASMTRSDYEKYHRTADGDMVHVCREAFLAAELIFQ 256
+I ++K Y D + T D E + DG + + E F AAE +FQ
Sbjct: 2249 AEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQ 2308
Query: 257 PDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDLYDAIVLCG 297
P L +G+ D + +++ ++ CD +LR +L+ IVL G
Sbjct: 2309 PSL-LGRDID--GIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
Score = 39.5 bits (88), Expect = 0.004
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 8 VVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVSKIEDLEL 67
VVIDNGS KAG + D P +F +VGRP + + V G+D + + L
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHKMWEHAFDQLRVR-GEDFPVLLTEAPL 2155
Query: 68 NKPVEKGRIV 77
N + + R+V
Sbjct: 2156 NPKMNRERMV 2165
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 97.1 bits (231), Expect = 2e-20
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Query: 230 EKYHRTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELRPDL 289
EK + DG ++ + E F E +FQP +G + + +A+ N ++ CD ++R DL
Sbjct: 11 EKTYELPDGQVISIGNERFRCPEAMFQPAF-LGMEAP--GIHEAIYNCIMKCDVDIRKDL 67
Query: 290 YDAIVLCGGLAMIPGLQERLAMEVENLTQT--PVNVIGSPEAYAVAWLGGATFAGLPDAK 347
Y VL GG M PG+ +R+ E+ L V VI PE W+GG+ A L +
Sbjct: 68 YSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQ 127
Query: 348 KMWVTKKQFEEYGEKIVRNK 367
+MW+ K+++ EYG IV K
Sbjct: 128 QMWIAKEEYHEYGPPIVHRK 147
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 65.7 bits (153), Expect = 6e-11
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 126 TLNVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQV 185
T NVPAL I QAVL++Y +G TTG+ +D G + P+Y+G + ++ T +AG V
Sbjct: 152 TFNVPALFISMQAVLSLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDV 211
Query: 186 SEYLKLQLEERG 197
S YL+L L + G
Sbjct: 212 SRYLRLLLRKEG 223
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 60.5 bits (140), Expect = 2e-09
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 128 NVPALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQVSE 187
N PA+ + QAVL++Y SG TTG+ D G + P+Y+G + +A LAG +++
Sbjct: 7 NSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTD 66
Query: 188 YLKLQLEERGIDLGVNT-ATVIENIKRDCLYVTKD 221
YL + ERG ++ +IK YV D
Sbjct: 67 YLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALD 101
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 60.5 bits (140), Expect = 2e-09
Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 137 QAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQVSEYLKLQL-EE 195
Q L++Y SG T G+ + G+ T+ +Y+G + + + G ++E LK L ++
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 196 RGIDLGVNTA-TVIENIKRDCLYVTKDASMTRSDYE------KYHRTADGDMVHVCREAF 248
RG + ++ ++ +IK Y++KD +Y+ K++ DG M+ + E
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECI 886
Query: 249 LAAELIFQPDLVM 261
+ E +F+PDL++
Sbjct: 887 SSMEPLFRPDLLL 899
Score = 33.5 bits (73), Expect = 0.28
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 7 AVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPD----YLHGSYGRQSYDVYIGDDAVSKI 62
A+V+DNG K GFA D P I VVG P + + + Y Y GD AV+K
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY-GDAAVAKS 760
Query: 63 EDLELNK 69
+ LN+
Sbjct: 761 GVMHLNQ 767
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 55.6 bits (128), Expect = 6e-08
Identities = 29/131 (22%), Positives = 58/131 (44%)
Query: 70 PVEKGRIVHWDNMERIWHHVFYKELKVAPEDRAVVLACTTTSPMXXXXXXXXXXXXTLNV 129
P++ G I WD E+I +++ K +K ++++ + NV
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 130 PALCIQPQAVLAVYGSGYTTGISVDLGYDTTEVTPVYQGGRIEYAHTETRLAGSQVSEYL 189
PA + +VL + +G + G+ +D G T PV+ G ++ A + LAG ++
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 190 KLQLEERGIDL 200
+ EE +++
Sbjct: 123 RQMFEETNVEV 133
Score = 36.7 bits (81), Expect = 0.030
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 238 GDMVHV-CREAFLAAELIFQPDLVMGQK----TDFLPLPDAVVNAVLVCDAELRPDLYDA 292
GD + CR+ F + P ++ K + + + V +V + D ++R L+++
Sbjct: 115 GDFITAQCRQMFEETNVEVIPPYMVASKGIEGSTAMGVTQVVTTSVGMTDIDIRAGLFNS 174
Query: 293 IVLCGGLAMIPGLQERLAMEVENLTQTPVNV-----IGSPEAYAVAWLGGATFAGL 343
+++ GG ++ G ERL E+ + T + + S E W+GG+ A L
Sbjct: 175 VIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 51.6 bits (118), Expect = 1e-06
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 270 LPDAVVNAVLVCDAELRPDLYDAIVLCGGLAMIPGLQERLAMEVENLTQTP--------- 320
L A+++++L+C + R L + IVL GG AM PG + RL E+ L Q+P
Sbjct: 58 LATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIK 117
Query: 321 -VNVIGSP-EAYAVAWLGGATFAGLPDAKKMWVTKKQFEEY 359
V + P A AWLGGA F L T+++++++
Sbjct: 118 TVKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQH 158
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 50.8 bits (116), Expect = 2e-06
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 241 VHVCREAFLAAELIFQPDLVMGQKTDFL-PLPDAVVNAVLVCDAELRPDLYDAIVLCGGL 299
V V E FL E+ F P+ DF PL + V N + C ++R LY IVL GG
Sbjct: 196 VDVAYERFLGPEIFFHPEF---SNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGS 252
Query: 300 AMIPGLQERLAMEVE-------NLTQT---------PVN---VIGSPEAYAVAWLGGATF 340
M RL +++ +++T P+ + + YAV W GG+
Sbjct: 253 TMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAV-WFGGSML 311
Query: 341 AGLPDAKKMWVTKKQFEEYGEKIVR-NKFL 369
A P+ + TK ++E+G I R N FL
Sbjct: 312 ASTPEFYSVCHTKADYDEHGPSICRHNPFL 341
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 35 VGRPDYLHGSYGRQSYDVYIGDDAVSKIEDLELNKPVEKGRIVHWDNMERIWHHVFYKEL 94
VG + G + D +IGD+A+ K P+ + WD MER W +K L
Sbjct: 267 VGNKSLGRSAKGVEDLDFFIGDEAIDK-PSYATKWPIRHAIVEDWDLMERFWEQCIFKYL 325
Query: 95 KVAPEDRAVVLA 106
+ PED +LA
Sbjct: 326 RAEPEDHYFLLA 337
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 37.5 bits (83), Expect = 0.017
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 1 MSFEKPAVVIDNGSYNIKAGFACDNHPVSIFRTVVGRPDYLHGSYGRQSYDVYIGDDAVS 60
+ F+ +V+D G+ + K GFA + P SI P+ + + + ++IGD +
Sbjct: 229 IQFKMATLVLDCGACSQKIGFASNQAPRSI-------PNAIFKAKSERR-KLFIGDQ-IE 279
Query: 61 KIED---LELNKPVEKGRIVHWDNMERIWHHVFYKE 93
+ +D L P +KG +V+WD ++IW + F KE
Sbjct: 280 ECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 35.5 bits (78), Expect = 0.070
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 8 VVIDNGSYNIKAGFACDNHPVSIFRTVVGRP 38
+VID GS+ K GFA D+ P +F +VGRP
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRP 1389
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.9 bits (64), Expect = 3.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 33 TVVGRPDYLHGSYGRQSYDVYIGDDAVSKIEDLELNKPVEKGRIVHWDNMERIWHHVFYK 92
T VG P + G +G Y +G SK+E + K +K + +I+H K
Sbjct: 1447 TYVGAPHFFGGGWG-YGYGHAVGGFGKSKVEKTDNKKKDKKSKKSSKSKKTKIYHAQKTK 1505
Query: 93 ELKVAPEDRAVV 104
E K + ++ VV
Sbjct: 1506 EEKASKKNDIVV 1517
>SB_1415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 28.7 bits (61), Expect = 8.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 138 AVLAVYGSGYTTGISVDLGY 157
A L +GSG++TG S+D GY
Sbjct: 33 ATLLGHGSGFSTGFSIDSGY 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,386
Number of Sequences: 59808
Number of extensions: 485662
Number of successful extensions: 967
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 30
length of query: 369
length of database: 16,821,457
effective HSP length: 83
effective length of query: 286
effective length of database: 11,857,393
effective search space: 3391214398
effective search space used: 3391214398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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