GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002083-TA|BGIBMGA002083-PA|IPR004000|Actin/actin-like
         (369 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              79   5e-17
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   2.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   2.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   9.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   9.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 79.4 bits (187), Expect = 5e-17
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 227 SDYEKYHRTADGDMVHVCREAFLAAELIFQPDLVMGQKTDFLPLPDAVVNAVLVCDAELR 286
           S  EK +   DG ++ +  E F   E +FQP   +G +     + +   N+++ CD ++R
Sbjct: 9   SSLEKSYELPDGQVITIGNERFRCPEALFQPSF-LGMEA--CGIHETTYNSIMKCDVDIR 65

Query: 287 PDLYDAIVLCGGLAMIPGLQERLAMEVENLTQT--PVNVIGSPEAYAVAWLGGATFAGLP 344
            DLY   VL GG  M PG+ +R+  E+  L  +   + +I  PE     W+GG+  A L 
Sbjct: 66  KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLS 125

Query: 345 DAKKMWVT 352
             ++MW++
Sbjct: 126 TFQQMWIS 133


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 316 LTQTPVNVIGSPEAYAVAWLGGAT 339
           + +TP+ +I S +   V W+ G T
Sbjct: 316 IDRTPIEIINSGDVQDVPWVTGVT 339


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 316 LTQTPVNVIGSPEAYAVAWLGGAT 339
           + +TP+ +I S +   V W+ G T
Sbjct: 316 IDRTPIEIINSGDVQDVPWVTGVT 339


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 227 SDYEKYHRTADGD 239
           +DY++YH+   GD
Sbjct: 30  NDYQRYHQQISGD 42


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 57  DAVSKIEDLELNKPVE 72
           D   K+EDLE+  P+E
Sbjct: 504 DKEKKLEDLEMGTPLE 519


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,572
Number of Sequences: 429
Number of extensions: 4140
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 369
length of database: 140,377
effective HSP length: 59
effective length of query: 310
effective length of database: 115,066
effective search space: 35670460
effective search space used: 35670460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)