Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002082-TA|BGIBMGA002082-PA|IPR004000|Actin/actin-like
(376 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 318 6e-88
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 237 2e-63
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 217 2e-57
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 138 2e-33
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 6e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 81 2e-16
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 72 2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 8e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 58 3e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.20
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 31 0.35
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 28 1.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 7.6
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 26 7.6
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 26 10.0
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 318 bits (782), Expect = 6e-88
Identities = 157/369 (42%), Positives = 238/369 (64%), Gaps = 5/369 (1%)
Query: 1 MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQ 58
M + +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQS 60
Query: 59 KRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKIT 118
KRGI L +P+ G++ +WD+MEK+WHH FY L + PE + + PL P+ ++EK+T
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 119 EILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPV 178
+I+FE+F + Y+A L+L+ASGRTTG+V +SG ++ P++EG+ L +A +
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Query: 179 DGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVY 238
G L+ +L K+L GY+F+T A+ +I+ IK CYVALD++ E+++ S + Y
Sbjct: 181 AGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSY 240
Query: 239 TLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIA 298
LPDGQ I +G ERF+ PE +F+P+ GL+ + + SI CD+D ++ Y NVV++
Sbjct: 241 ELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMS 300
Query: 299 GGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLL 358
GG+TM+PGI DR+Q E+ + L S + KV + A R+++VW GGSI+ASLST +
Sbjct: 301 GGTTMYPGIADRMQKEI--QALAPS-SMKVKIVAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 359 SKEEYEDNG 367
SK+EY+++G
Sbjct: 358 SKQEYDESG 366
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 237 bits (580), Expect = 2e-63
Identities = 126/362 (34%), Positives = 206/362 (56%), Gaps = 6/362 (1%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQKRGISHL 65
I +D GS + KAGFAG+ P+ +FP+ VGR + ++ +++ G+EA RG+ +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 66 TWPVSKGLIQDWDEMEKLWHHIFY-KGLLIPPEACSVVHSIHPLCPRKHQEKITEILFES 124
P+ +G+IQ+W +ME++W +I+ + L PE ++ + PL +++EKI E +E+
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 125 FTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLS 184
+ +L + LAL+AS RTTG+V E G +++ P+++GF + +A + G ++
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 185 GHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPDGQ 244
+LQ L G+ + A+ +I+ +IK CYVA D+ E+ES H Y LPD Q
Sbjct: 192 DYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQ 251
Query: 245 EIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMF 304
I LG E F PE++F P + G + L L KSI D+D + Y N+V++GGST+
Sbjct: 252 TITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLL 311
Query: 305 PGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLLSKEEYE 364
G +R EL + + +N +V + A R W GGSI+ASLST L++ EEY+
Sbjct: 312 RGFGERFISEL--RAISGKKN-QVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEYK 368
Query: 365 DN 366
++
Sbjct: 369 ND 370
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 217 bits (530), Expect = 2e-57
Identities = 122/374 (32%), Positives = 214/374 (57%), Gaps = 15/374 (4%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVGR-----FRQSGLVDGFPEVYCGNEAIQKRGI 62
IVLD G+ + K G+A + FPR FPS VGR ++G V +V G+EA R +
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQ-IKDVMVGDEAEAVRSL 64
Query: 63 SHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILF 122
+ +P+ G+I+D++EM +LW + F++ L I P ++ + P+ P ++EK+ E +F
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 123 ESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGET 182
E + +Y+A L+L+A G ++GVV +SG ++ PV+E L + V G
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRD 184
Query: 183 LSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPD 242
+ +L LL GY+F AD + + ++K CYV+ D + + + + + YTLPD
Sbjct: 185 ATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPD 244
Query: 243 GQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAGGST 302
G+ I +G ER++CPE +F+P+L G + P L + + +I+ D+D ++ Y +V++GGS+
Sbjct: 245 GRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSS 304
Query: 303 MFPGIVDRLQLELT----KKLL----KRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMN 354
M+ G+ RL+ E+ +++L R N+KV ++ R+ AV+ GG+++A + N
Sbjct: 305 MYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQN 364
Query: 355 GFL-LSKEEYEDNG 367
+ +SK E+E+ G
Sbjct: 365 DHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 138 bits (333), Expect = 2e-33
Identities = 114/420 (27%), Positives = 194/420 (46%), Gaps = 58/420 (13%)
Query: 1 MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGL-----VDGFP------- 48
M+ + I++D G+ Y+K G+AG P VFP+ + R +G V P
Sbjct: 1 MASFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKG 59
Query: 49 -------------EVYCGNEAIQKRGISH-LTWPVSKGLIQDWDEMEKLWHHIFYKGLLI 94
+ + GN+A++K + L +P+ G I++WD ME+ W +K L
Sbjct: 60 SGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRC 119
Query: 95 PPEACSVVHSIHPLCPRKHQEKITEILFESFTINSLYLARMQALALFASGRT-------- 146
PE + + PL P +++E EI+FESF LY+A LAL AS +
Sbjct: 120 EPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSL 179
Query: 147 TGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGHLQKLLATVGYSFTTKADNDI 206
TG V +SG ++ PV EG+ + ++ P+ G ++ +Q LL + D+ +
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRD-----RNEPDSSL 234
Query: 207 --LDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPD----GQEIFLGPERFQCPELMF 260
++IK + CYV D E D Y I +G ERF PE+ F
Sbjct: 235 KTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFF 294
Query: 261 RPNLGGLQ-CPSLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKL 319
P + L +L+ +++ +D ++ Y+N+V++GGST+F +RLQ +L + +
Sbjct: 295 NPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIV 354
Query: 320 LKRSENWKVLVDAMT-----------TRQFAVWNGGSIMASLSTMNGFLLSKEEYEDNGS 368
+R ++L A + ++ AVW GGS++A + +K +YE+ G+
Sbjct: 355 DERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGA 414
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.0 bits (196), Expect = 6e-17
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 7/200 (3%)
Query: 3 GDAIG-IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRG 61
GD + IV+D GSK+T+ GF+GE P+ V PS G F + G +Y N ++ +
Sbjct: 8 GDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFGEEYIYKSNPGMEIKN 67
Query: 62 ISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEIL 121
+ G +++WD LW + + L P ++ + P +++ K E +
Sbjct: 68 A------IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETM 121
Query: 122 FESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGE 181
FES + YLA+ + A FASG+ T + + G S + +++GF L+ + G
Sbjct: 122 FESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGN 181
Query: 182 TLSGHLQKLLATVGYSFTTK 201
++ L + L + K
Sbjct: 182 AINDILAQTLRDKNFEVMPK 201
Score = 70.1 bits (164), Expect = 5e-13
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 280 IENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDA-MTTRQF 338
I CD+D + + NV++ GG+++ G RLQ EL+K L K+ + R +
Sbjct: 335 ISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSK--LYPGSRLKIHASGHVVERSY 392
Query: 339 AVWNGGSIMASLSTMNGFLLSKEEYEDNGSDRV 371
A W GGSI++SL T + +S++EYE++GSDR+
Sbjct: 393 ASWLGGSILSSLGTFHQLWISRQEYEEHGSDRL 425
Score = 30.3 bits (65), Expect = 0.46
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 238 YTLPDGQEIFLGPERFQCPELMFRP 262
+ PDG + G ER+Q PE +F P
Sbjct: 264 FEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 81.4 bits (192), Expect = 2e-16
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 222 DDEVESGKCSGDDKHVYTLPDGQEIFLGPERFQCPELMFRPNLGGLQCPS---------L 272
D + K S + + PDG G ERF+ E++F P+ + L
Sbjct: 265 DTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGL 324
Query: 273 VDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDA 332
+L+ +SI CD + + N+V+ GG+++ PG+ +RLQ E+ + N A
Sbjct: 325 HELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETA 384
Query: 333 MTTRQFAVWNGGSIMASLSTMNGFLLSKEEYEDNGSDR 370
T AVW GGSI+ASL +SK+EY++ G DR
Sbjct: 385 SATSN-AVWFGGSILASLDNFQHLWVSKQEYDEVGVDR 421
Score = 70.9 bits (166), Expect = 3e-13
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 4/192 (2%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVG-RFRQSGLVDGFPEVYCGNEAIQKRGISHLT 66
+V+D GS +T+ G+AGE P + PS G R +G + + I + +
Sbjct: 13 LVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKN-- 70
Query: 67 WPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILFESFT 126
S G+IQDW+ W + L + P +++ + P+ +++I E FE
Sbjct: 71 -GKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLH 129
Query: 127 INSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGH 186
+ + YL + FA+ ++T ++ + G + PV +G +R F + G+ L+ +
Sbjct: 130 VPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNAN 189
Query: 187 LQKLLATVGYSF 198
+++L T+ F
Sbjct: 190 IEQLFNTMNIEF 201
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 71.7 bits (168), Expect = 2e-13
Identities = 97/400 (24%), Positives = 167/400 (41%), Gaps = 52/400 (13%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRGISHLTW 67
IVLD G+ + KAGFAG P+ + R + DG ++ GNE + L +
Sbjct: 8 IVLDNGAYHIKAGFAGGKVVE--IPNCLTRSK-----DG-NRLFLGNELANCNDFTTLQF 59
Query: 68 PVS--KGLIQDWDEMEKLWHHIFYK-GLLIPPEACSVVHSIHPLCPRKHQEKIT-EILFE 123
+ KG + W +W + G++ P A + P+ E T +++FE
Sbjct: 60 RRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFE 119
Query: 124 SFTINSLYLARMQALALFASGRTTG--------------VVWESGYSCSYAAPVFEGFPL 169
F ++ L + G T +V +SGYS ++ PV +
Sbjct: 120 EFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQ 179
Query: 170 RNATFMSPVDGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVE--S 227
A V G+ L+ +L+++++ Y+ + I+++IK CYV+ ++ +++E
Sbjct: 180 EQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICH 237
Query: 228 GKCSGDDKHVYTLPD------------------GQEIFLGPERFQCPELMFRPNLGGLQC 269
K + Y LPD Q + L ERF PEL+F P+ ++
Sbjct: 238 EKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIRE 297
Query: 270 PSLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVL 329
+ + + +S+ + + Q ENVV GG+ FPG RL EL NW+V
Sbjct: 298 AGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRS---LAPANWEVK 354
Query: 330 VDAMTTRQFAVWNGGSIMASLSTMNGFLLSKEEYEDNGSD 369
V + W S M L N +++ EY ++G++
Sbjct: 355 VFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGAN 393
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.1 bits (154), Expect = 8e-12
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 8/224 (3%)
Query: 6 IGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRGISHL 65
I +V+D GS +AG+ GE P+ VF + V R+R L GN+ + + G +
Sbjct: 25 IPLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKL--SRTSTLVGNDTLIEVGSRSI 82
Query: 66 T-WPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLC-PRKHQEKITEILFE 123
P + +I +WD ME++ + F K + E + PL P + +TE+LFE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFLKLGIDRME--HPICMTEPLANPTYVRSTMTELLFE 140
Query: 124 SFTINSLYLARMQALALFASGR--TTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGE 181
+ S+ + + + + ++G+V G + S+ PV G + + G
Sbjct: 141 LYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGS 200
Query: 182 TLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEV 225
S +L KL SF K + + D C+V+ DY ++
Sbjct: 201 QSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDI 244
Score = 54.4 bits (125), Expect = 2e-08
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 245 EIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMF 304
++ L E+ + PE++F P++ G+ +++++ ++ L+ Q+ NV+I GG
Sbjct: 588 QLHLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSL 647
Query: 305 PGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLLSKEEYE 364
PG+ R++ ELT + S + V + W G S + +++EEY
Sbjct: 648 PGMETRIKRELTSIMPVGS---SINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYL 704
Query: 365 DNGSDRVK 372
+ G + +K
Sbjct: 705 EKGPEYIK 712
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 57.6 bits (133), Expect = 3e-09
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 68 PVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRK----HQEKITEILFE 123
P+ +G + DW+ ++ W H+ Y LL P + + + + P +E T+ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKHL-YSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 124 SFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETL 183
+ +A + L+A G G+V + GY + P+ +G + AT P+ G +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 184 SGHLQKLL 191
+ HLQ LL
Sbjct: 232 TQHLQNLL 239
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.20
Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 8/172 (4%)
Query: 100 SVVHSIHPLCPRKHQEKITEILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSY 159
SV+ + L R + EKI +ILF + + F +G + V + G +
Sbjct: 245 SVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTS 304
Query: 160 AAPVFEGFPLRNATFMSPVDGETLSGHLQKLLATVGYSF-----TTKADNDILDQIKSDK 214
+ V EG + N+ G+ ++ KLL + + T D + + +K
Sbjct: 305 ISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPYQDIDLKTPYDWSLANALKIKY 364
Query: 215 CYVA-LDYDDEVESGKCSGDDK--HVYTLPDGQEIFLGPERFQCPELMFRPN 263
C ++ Y+ ++ S DK +T E L P F P++ N
Sbjct: 365 CGLSEATYNVQLNSFFSRTPDKGTRKFTFKSLDETMLAPLGFFRPDIFENEN 416
Score = 29.5 bits (63), Expect = 0.81
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 292 YENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLS 351
Y +++I GG+ FPG L+ + K + QF W G I +
Sbjct: 530 YSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIR 589
Query: 352 TMNGFLLSKEEYEDNGS 368
++ + +++ GS
Sbjct: 590 IVSELWIKNSDWKMLGS 606
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 30.7 bits (66), Expect = 0.35
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 275 LLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLE-LTKKLLKRSENWKVLVDAM 333
+LC + YQ A + V A GS++ + + E LTK+ R EN K LVDA
Sbjct: 259 ILCSVCKKPSNTYQ-ALLDLSVDAKGSSLADSLKHFVHAEKLTKQNKYRCENCKQLVDA- 316
Query: 334 TTRQFAVWNGGSIMA---SLSTMNGFLLSK 360
++Q ++ +I+ T NGF SK
Sbjct: 317 -SKQMTIYRAPNILTIHFKRFTFNGFQSSK 345
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 6 IGIVLDIGSKYTKAGFAG-ECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQK 59
I ++ +G + A F+ E + FP + ++ G++DGFP NE I K
Sbjct: 11 IQVIAIVGILVSMAYFSFLEALTQEDFPVLIRALKRFGILDGFPNTRLPNEMILK 65
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 84 WHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEI 120
W H ++KG L+P + V+ S HP+ H +T +
Sbjct: 798 WQHNYWKGKLVPGD---VLLSNHPIAGGVHLPDLTVV 831
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 7.6
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 285 LDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGG 344
+D +R + +V G PG R Q E+T + L V TT WNG
Sbjct: 282 IDIRRIMSKLIVFNGILPSLPGWYQRFQNEMTSRGLAIK-----AVPGQTTADMMAWNGA 336
Query: 345 S 345
S
Sbjct: 337 S 337
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 10.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 275 LLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLK 321
++ K I L AFYE V G+ D+ +EL KKL K
Sbjct: 474 IIAKKITPASLGALIAFYEWVTFTEGAVWNINSFDQFGVELGKKLAK 520
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 10.0
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 165 EGFPLRNATFMSPVDGETLSGHLQKLLATVGYSFTTKADNDILDQIK 211
EG + F+ + ++ H+Q L ++ F + D D L++I+
Sbjct: 411 EGLRTLDTVFVEATNDGQINSHIQGLTKSLNRRFVSFVDQDELEEIR 457
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.139 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,737
Number of Sequences: 5004
Number of extensions: 78530
Number of successful extensions: 208
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 25
length of query: 376
length of database: 2,362,478
effective HSP length: 74
effective length of query: 302
effective length of database: 1,992,182
effective search space: 601638964
effective search space used: 601638964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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