Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002082-TA|BGIBMGA002082-PA|IPR004000|Actin/actin-like
(376 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 332 4e-91
SB_56| Best HMM Match : Actin (HMM E-Value=0) 332 4e-91
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 328 3e-90
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 328 4e-90
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 272 2e-73
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 218 7e-57
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 215 6e-56
SB_54| Best HMM Match : Actin (HMM E-Value=0) 167 1e-41
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 126 2e-29
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 99 3e-21
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 87 3e-17
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 87 3e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 80 3e-15
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 66 3e-11
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 44 2e-04
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 44 3e-04
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 39 0.006
SB_29118| Best HMM Match : GRP (HMM E-Value=8) 34 0.22
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 31 1.2
SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3) 29 4.7
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) 29 4.7
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 29 6.2
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.2
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 332 bits (815), Expect = 4e-91
Identities = 164/379 (43%), Positives = 240/379 (63%), Gaps = 6/379 (1%)
Query: 1 MSGDAIG-IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAI 57
M D I +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 58 QKRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKI 117
KRGI L +P+ G++ +WD+MEK+WHH FY L + PE V+ + PL P+ ++EK+
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 118 TEILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSP 177
T+I+FE+F ++Y+A L+L+ASGRTTG+V +SG ++ P++EG+ L +A
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLD 180
Query: 178 VDGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHV 237
+ G L+ +L K+L GYSFTT A+ +I+ IK CYVALD++ E+E+ S +
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKS 240
Query: 238 YTLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVI 297
Y LPDGQ I +G ERF+CPE MF+P+ G++ + + SI CD+D ++ Y N V+
Sbjct: 241 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 300
Query: 298 AGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFL 357
+GGSTM+PGI DR+Q E+T K+ + A R+++VW GGSI+ASLST
Sbjct: 301 SGGSTMYPGIADRMQKEITS---LAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW 357
Query: 358 LSKEEYEDNGSDRVKHLFF 376
+SK+EY+++G V F
Sbjct: 358 ISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 332 bits (815), Expect = 4e-91
Identities = 161/378 (42%), Positives = 239/378 (63%), Gaps = 5/378 (1%)
Query: 1 MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQ 58
M + +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA
Sbjct: 1 MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 59 KRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKIT 118
KRGI L +P+ G++ +WD+MEK+WHH FY L + PE V+ + PL P+ ++EK+T
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 119 EILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPV 178
+I+FE+F ++Y+A L+L+ASGRTTG+V +SG ++ P++EG+ L +A +
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 179 DGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVY 238
G L+ +L K+L GYSFTT A+ +I+ IK CYVALD++ E+++ S + Y
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSY 240
Query: 239 TLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIA 298
LPDGQ I +G ERF+CPE MF+P+ G++ + + SI CD+D ++ Y N V++
Sbjct: 241 ELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLS 300
Query: 299 GGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLL 358
GGSTM+PGI DR+Q E+T K+ + A R+++VW GGSI+ASLST +
Sbjct: 301 GGSTMYPGIADRMQKEITS---LAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 359 SKEEYEDNGSDRVKHLFF 376
SK+EY+++G V F
Sbjct: 358 SKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 328 bits (807), Expect = 3e-90
Identities = 160/375 (42%), Positives = 237/375 (63%), Gaps = 5/375 (1%)
Query: 4 DAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQKRG 61
D +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA KRG
Sbjct: 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 62 ISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEIL 121
I L +P+ G++ +WD+MEK+WHH FY L + PE V+ + PL P+ ++EK+T+I+
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 122 FESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGE 181
FE+F ++Y+A L+L+ASGRTTG+V +SG ++ P++EG+ L +A + G
Sbjct: 125 FETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 182 TLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLP 241
L+ +L K+L GYSFTT A+ +I+ IK CYVALD++ E+ + S + Y LP
Sbjct: 185 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELP 244
Query: 242 DGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAGGS 301
DGQ I +G ERF+CPE MF+P+ G++ + + SI CD+D ++ Y N V++GGS
Sbjct: 245 DGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGS 304
Query: 302 TMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLLSKE 361
TM+PGI DR+Q E++ K+ + A R+++VW GGSI+ASLST +SK+
Sbjct: 305 TMYPGIADRMQKEIS---ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 362 EYEDNGSDRVKHLFF 376
EY+++G V F
Sbjct: 362 EYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 328 bits (806), Expect = 4e-90
Identities = 161/378 (42%), Positives = 237/378 (62%), Gaps = 5/378 (1%)
Query: 1 MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQ 58
M D +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA
Sbjct: 1 MEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 59 KRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKIT 118
KRGI L +P+ G++ +WD+MEK+WHH FY L + PE V+ + PL P+ ++EK+T
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 119 EILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPV 178
+I+FE+F ++Y+A L+L+ASGRTTG+V +SG ++ P++EG+ L +A +
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 179 DGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVY 238
G L+ +L K+L GYSFTT A+ +I+ IK YVALD++ E+ + S + Y
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSY 240
Query: 239 TLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIA 298
LPDGQ I +G ERF+CPE MF+P+ G++ + + SI CD+D ++ Y N V++
Sbjct: 241 ELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLS 300
Query: 299 GGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLL 358
GGSTMFPGI DR+Q E++ K+ + A R+++VW GGSI+ASLST +
Sbjct: 301 GGSTMFPGIADRMQKEIS---ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 359 SKEEYEDNGSDRVKHLFF 376
SK+EY+++G V F
Sbjct: 358 SKQEYDESGPSIVHRKCF 375
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 272 bits (668), Expect = 2e-73
Identities = 143/366 (39%), Positives = 218/366 (59%), Gaps = 32/366 (8%)
Query: 4 DAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQKRG 61
D +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA KRG
Sbjct: 5 DIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 62 ISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEIL 121
I L +P+ G++ +WD+MEK+WHH FY L + PE V+ + PL P+ ++EK+T+I+
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 122 FESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGE 181
FE+F ++Y+A L+L+ASGRTTG+V +SG S+ P++E R +F + + E
Sbjct: 125 FETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEE---RGYSFTTTAERE 181
Query: 182 TLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLP 241
I+ IK CYVALD++ E+++ S + Y LP
Sbjct: 182 ------------------------IVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELP 217
Query: 242 DGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAGGS 301
DGQ I +G ERF+CPE + +P+ G++ + + SI CD+D ++ Y N V++GG+
Sbjct: 218 DGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGT 277
Query: 302 TMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFLLSKE 361
TM+PG+ DR+Q E++ K+ + A R+++VW GGSI+ASLST +SK+
Sbjct: 278 TMYPGLADRMQKEIS---ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 334
Query: 362 EYEDNG 367
EY+++G
Sbjct: 335 EYDESG 340
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 218 bits (532), Expect = 7e-57
Identities = 102/253 (40%), Positives = 162/253 (64%), Gaps = 3/253 (1%)
Query: 115 EKITEILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATF 174
+ + +I+FE+F ++Y+A L+L+ASGRTTG+V +SG ++ P++EG+ L +A
Sbjct: 80 DDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAII 139
Query: 175 MSPVDGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDD 234
+ G L+ +L K+L GYSFTT A+ +I+ IK CYVALD++ E+++ S
Sbjct: 140 RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSL 199
Query: 235 KHVYTLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYEN 294
+ Y LPDGQ I +G ERF+CPE MF+P+ G++ + + SI CD+D ++ Y N
Sbjct: 200 EKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYAN 259
Query: 295 VVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMN 354
V++GG+TM+PGI DR+Q E++ K+ + A R+++VW GGSI+ASLST
Sbjct: 260 TVLSGGTTMYPGIADRMQKEIS---ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 316
Query: 355 GFLLSKEEYEDNG 367
+SK+EY+++G
Sbjct: 317 QMWISKQEYDESG 329
Score = 85.4 bits (202), Expect = 7e-17
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 1 MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQ 58
M D +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA
Sbjct: 1 MDDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 59 KRGISHLTWPVSKGLIQDWDEMEKLWHHIF 88
KRGI L +P+ G++ +WD+MEK+ F
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 215 bits (524), Expect = 6e-56
Identities = 123/397 (30%), Positives = 220/397 (55%), Gaps = 32/397 (8%)
Query: 2 SGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGR--FRQSGLVDGFP--EVYCGNEAI 57
+G+++ IV D G+ + K G+AG FP +FPS VGR R S V ++ G+EA
Sbjct: 4 NGNSV-IVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEAS 62
Query: 58 QKRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLL-IPPEACSVVHSIHPLCPRKHQEK 116
Q R + + +P+ G++++WD+M+ +W + F + + I P V+ + PL P K++EK
Sbjct: 63 QLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
Query: 117 ITEILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMS 176
+ E++FE++ +Y+A L L+A G TGVV +SG ++ PV+EGF L + T
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRL 182
Query: 177 PVDGETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKH 236
+ G ++ +L KL+ GY+F AD + + +K CYV + + E + +
Sbjct: 183 DIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVE 242
Query: 237 VYTLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVV 296
YTLPDG+ + L ERF+ PE +F+P+L ++ + +LL +I+ D+D + FY+++V
Sbjct: 243 QYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIV 302
Query: 297 IAGGSTMFPGIVDRLQLELTKKLLKR-------------------------SENWKVLVD 331
++GGSTM+PG+ RL+ E+ + L+R + +K+ ++
Sbjct: 303 LSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIE 362
Query: 332 AMTTRQFAVWNGGSIMAS-LSTMNGFLLSKEEYEDNG 367
R+ V+ GG+++A + + F ++++EYE+ G
Sbjct: 363 DPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 167 bits (407), Expect = 1e-41
Identities = 80/218 (36%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 82 KLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILFESFTINSLYLARMQALALF 141
K+W H F + L + E V+ + PL P+ ++E++ +++FESF + +Y+A +AL+
Sbjct: 2130 KMWEHAFDQ-LRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 142 ASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGHLQKLLATVGYSFTTK 201
ASGRTTG V++ G S+ PV++G+ L +AT + G L+ +LQ+L+ GYSF +
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 202 ADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPDGQEIFLGPERFQCPELMFR 261
A+ I+ +K CY A+DY+ E++ + S D + Y LPDGQ I +G ERF+ E +F+
Sbjct: 2249 AEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQ 2308
Query: 262 PNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAG 299
P+L G + + + KSI+ CD+D + + N+V++G
Sbjct: 2309 PSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
Score = 35.1 bits (77), Expect = 0.094
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFR 39
+V+D GS + KAG + + PR VFP+ VGR R
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPR 2128
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 126 bits (305), Expect = 2e-29
Identities = 60/130 (46%), Positives = 85/130 (65%), Gaps = 3/130 (2%)
Query: 238 YTLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVI 297
Y LPDGQ I +G ERF+CPE MF+P G++ P + + + I CD+D ++ Y N V+
Sbjct: 14 YELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVL 73
Query: 298 AGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASLSTMNGFL 357
+GGSTMFPGI DR+Q E+ + + + KV V A R+++VW GGSI+ASLST
Sbjct: 74 SGGSTMFPGIADRMQKEIA---MLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMW 130
Query: 358 LSKEEYEDNG 367
++KEEY + G
Sbjct: 131 IAKEEYHEYG 140
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 99 bits (238), Expect = 3e-21
Identities = 47/106 (44%), Positives = 70/106 (66%)
Query: 120 ILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVD 179
I+FE+F ++Y+A L+L+ASGRTTGVV++SG S+ P++EG+ L +A +
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 180 GETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEV 225
G L+ +L KL+ GYSFTT A+ +I+ IK CYVALD+ E+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 86.6 bits (205), Expect = 3e-17
Identities = 37/107 (34%), Positives = 71/107 (66%)
Query: 107 PLCPRKHQEKITEILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEG 166
PL PR+++EK E+ FE+F + +L+++ L+L+A+GRTTGVV ++G S++ P++EG
Sbjct: 135 PLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGVSHSVPIYEG 194
Query: 167 FPLRNATFMSPVDGETLSGHLQKLLATVGYSFTTKADNDILDQIKSD 213
F + ++ + + G +S +L+ LL G+ F + ++ +I+ IK +
Sbjct: 195 FAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
Score = 43.2 bits (97), Expect = 4e-04
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 271 SLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPG 306
S++++L +I+ DLD +R Y N+V++GGST+F G
Sbjct: 256 SIIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 86.6 bits (205), Expect = 3e-17
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Query: 137 ALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGHLQKLLATV-G 195
+L+L+ASG T GV SG+SC+ AA ++EG L + + G L+ +L++ L G
Sbjct: 769 SLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQRG 828
Query: 196 YSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPDGQEIFLGPERFQC 255
++FT+ + I++ IK CY++ D+ EV + K + YTLPDGQ I +G E
Sbjct: 829 HNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECISS 888
Query: 256 PELMFRPNL 264
E +FRP+L
Sbjct: 889 MEPLFRPDL 897
Score = 35.9 bits (79), Expect = 0.054
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVGR-FRQSGLVDGFPEV----YCGNEAIQKRGI 62
IVLD G +K GFAG+ PR + P+ VG R S L+ V G+ A+ K G+
Sbjct: 703 IVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKYGDAAVAKSGV 762
Query: 63 SHL 65
HL
Sbjct: 763 MHL 765
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 80.2 bits (189), Expect = 3e-15
Identities = 37/123 (30%), Positives = 71/123 (57%)
Query: 68 PVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILFESFTI 127
P+ G+I+DWD EK+ +I+ K + ++ S R +EK+TE++FE + +
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 128 NSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGHL 187
+ +L + L FA+GR+ G+V +SG + + A PV +G+ L+ A SP+ G+ ++
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 188 QKL 190
+++
Sbjct: 123 RQM 125
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 256 PELMFRPNLGGLQCPSLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLEL 315
P ++ + G + ++ S+ D+D + + +V++ GG+T+ G V+RL EL
Sbjct: 136 PYMVASKGIEGSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNREL 195
Query: 316 TKKLLKRSENWKVLVDAMTTRQFAVWNGGSIMASL 350
K + ++ ++F W GGSI+ASL
Sbjct: 196 VSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 66.5 bits (155), Expect = 3e-11
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 251 ERFQCPELMFRPNLGGLQCPS-LVDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVD 309
ERF PE+ F P + L +++ I+NC +D +R Y+N+V++GGSTMF
Sbjct: 201 ERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGR 260
Query: 310 RLQLELTKKL---LKRSENW----------KVLVDAMTTRQFAVWNGGSIMASLSTMNGF 356
RLQ ++ + + LK SE + V + +++AVW GGS++AS
Sbjct: 261 RLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSV 320
Query: 357 LLSKEEYEDNGSDRVKH 373
+K +Y+++G +H
Sbjct: 321 CHTKADYDEHGPSICRH 337
Score = 29.5 bits (63), Expect = 4.7
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 147 TGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGHLQKLLATVGYSFTTKADNDI 206
TG V +SG ++ PV EG+ + + P+ G ++ +Q+LL + +
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSMET 121
Query: 207 LDQIKSDKCYVALDYDDE 224
IK Y+ D E
Sbjct: 122 AKTIKERWGYICPDIAKE 139
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 46.4 bits (105), Expect = 4e-05
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 271 SLVDLLCKSIENCDLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLV 330
SL L S+ C +D ++ EN+V+ GG+ M PG RL E+ L K+ +
Sbjct: 57 SLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFI 116
Query: 331 DAMTTRQ------FAVWNGGSIMASLSTMNGFLLSKEEYEDN 366
+ Q W GG+I SL + ++E Y+ +
Sbjct: 117 KTVKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQH 158
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 44.0 bits (99), Expect = 2e-04
Identities = 56/253 (22%), Positives = 108/253 (42%), Gaps = 58/253 (22%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRGISHLTW 67
+VLD G+ K GFA PR++ P+ + + + +++ G++ + + S L +
Sbjct: 236 LVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSERR-----KLFIGDQIEECKDYSALFY 289
Query: 68 --PVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILFESF 125
P KG + +WD +++W + F K L ++ + EILFE +
Sbjct: 290 VLPFQKGFLVNWDVEKQIWDYTFGKEGL--------------------EDAMDEILFEEY 329
Query: 126 TINSLYLARMQALALF------ASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVD 179
+L L+ + S +V ++GYS ++ PVF G ++ A
Sbjct: 330 NFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKA------- 382
Query: 180 GETLSGHLQKLLATVGYSFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHV-- 237
+++ L + +F +++Q+K D CYV+ + ++E + G + +
Sbjct: 383 -------VRRQLHVLDETF-------VINQVKEDTCYVSSQFYKDMEIARQRGKENTIVR 428
Query: 238 -YTLPDGQEIFLG 249
Y LPD I G
Sbjct: 429 EYVLPDYTHIKRG 441
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 43.6 bits (98), Expect = 3e-04
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 49 EVYCGNEAIQKRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPE 97
+ + G+EAI K + WP+ +++DWD ME+ W +K L PE
Sbjct: 283 DFFIGDEAIDKPSYA-TKWPIRHAIVEDWDLMERFWEQCIFKYLRAEPE 330
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 39.1 bits (87), Expect = 0.006
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 8 IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFR 39
+V+D+GS K GFAG+ P+ VFP VGR R
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPR 1390
>SB_29118| Best HMM Match : GRP (HMM E-Value=8)
Length = 333
Score = 33.9 bits (74), Expect = 0.22
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 204 NDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPDGQEIFLG 249
ND++D++ + + A+D DDEV G S DD+ Y + E+F G
Sbjct: 66 NDVVDRVVVVEVFYAMDGDDEVFYGMDS-DDEVFYGMDSDDEVFYG 110
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 89 YKGLLIPPEACSVVHSIHPLCPRKHQEKITEILFESFTINSLYLARMQALALFASGRTTG 148
+ L + P V+ +I + +E++ EIL F + ++YL LA+++ +G
Sbjct: 518 FLSLKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSG 577
Query: 149 VV 150
+V
Sbjct: 578 IV 579
>SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)
Length = 682
Score = 29.5 bits (63), Expect = 4.7
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 158 SYAAPVFEGFPLRNATFMSPVDGETLSGHLQ----KLLATVGYSFTTKADNDILDQIKSD 213
S +AP+F+G N ++ +TL+ Q +LL T+G+ K ++D L +
Sbjct: 150 SSSAPLFQGHCPSNCEQKKNLENDTLTDQAQINIDELLETIGFYLKGKVESDSLGEEGCP 209
Query: 214 KCYVALDYDD----EVESGKCSGDDKHVYTLPDGQEIFLGPERFQCPELMFRPNLGGLQC 269
K DD E+ + K + + + I+ ER + + + + L C
Sbjct: 210 KGSANSTGDDEMSHELHEETTVSEKKSINSHCISENIYFELERPEDENMPHQEAMVELDC 269
Query: 270 PS--LVDLLCKSIEN 282
PS +++ + +EN
Sbjct: 270 PSNNMIENIYHVLEN 284
>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
Length = 841
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 197 SFTTKADNDILDQIKSDKCYVALDYDDEVESGKCSGDDKHVYTLPDGQEIFLGPERFQCP 256
S+T K + ++ C DE+ + C G + ++ L G E++ P+R
Sbjct: 15 SYTGKCLRTLQGHPRTPWCIAFHPSADELVASGCLGGEVRIWDLKGGCEMYTPPDRAVIA 74
Query: 257 ELMFRP 262
L F P
Sbjct: 75 SLAFHP 80
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 114 QEKITEILFESFTINSLYLARMQALALFASGRTTGVV 150
+E++ EIL F + ++YL LA+++ +G+V
Sbjct: 422 KEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2103
Score = 28.7 bits (61), Expect = 8.2
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 103 HSIHPLC-PRKHQEKITEILFESFTINSLYLARMQALALFASGRTTGVVWESG--YSCSY 159
HS+ L P +++ ++T + FTI ++ A + A+FA G + + YS +Y
Sbjct: 47 HSLPSLITPVRNKSRLTLLFVSDFTIILIFYAVLSFTAMFAFGDLKDLYTLNFVIYSNAY 106
Query: 160 AAPVFEGFPLRNATFMSPVDGETLSGHLQKLLATVG 195
FP+ + P+ TL +L+ L G
Sbjct: 107 VRYFLALFPVFTLSTNFPIISVTLRDNLKNLFYREG 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.139 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,959
Number of Sequences: 59808
Number of extensions: 578760
Number of successful extensions: 1066
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 37
length of query: 376
length of database: 16,821,457
effective HSP length: 83
effective length of query: 293
effective length of database: 11,857,393
effective search space: 3474216149
effective search space used: 3474216149
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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