GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002082-TA|BGIBMGA002082-PA|IPR004000|Actin/actin-like
         (376 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             109   3e-26

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  109 bits (263), Expect = 3e-26
 Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 3/136 (2%)

Query: 224 EVESGKCSGDDKHVYTLPDGQEIFLGPERFQCPELMFRPNLGGLQCPSLVDLLCKSIENC 283
           E+ +   S   +  Y LPDGQ I +G ERF+CPE +F+P+  G++   + +    SI  C
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 284 DLDYQRAFYENVVIAGGSTMFPGIVDRLQLELTKKLLKRSENWKVLVDAMTTRQFAVWNG 343
           D+D ++  Y N V++GG+TM+PGI DR+Q E+T          K+ + A   ++++VW G
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT---ALAPSTMKIKIIAPPEKKYSVWIG 117

Query: 344 GSIMASLSTMNGFLLS 359
           GSI+ASLST     +S
Sbjct: 118 GSILASLSTFQQMWIS 133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,762
Number of Sequences: 429
Number of extensions: 4779
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 376
length of database: 140,377
effective HSP length: 59
effective length of query: 317
effective length of database: 115,066
effective search space: 36475922
effective search space used: 36475922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)