GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002081-TA|BGIBMGA002081-PA|IPR011765|Peptidase M16,
N-terminal, IPR007863|Peptidase M16, C-terminal
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...   236   5e-63
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    84   5e-17
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    35   0.021
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   9.7  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score =  236 bits (577), Expect = 5e-63
 Identities = 139/435 (31%), Positives = 238/435 (54%), Gaps = 14/435 (3%)

Query: 33  PGTKISLLPNGVRIATEQ-TQSPLACVSLFIEAGPRFETPENNGASHFLEHMAFCGFKSM 91
           P T+ + L NG+ +ATE    +  A V + ++AG R ET +NNGA+HFLEH+AF G K+ 
Sbjct: 20  PKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNR 79

Query: 92  NQCEIEHNLLQMGAKINAETTKEIQRFVAICPSENAHEMVAFLCRIITDLDLNDSSIETE 151
           +Q  +E      GA +NA T++E   + A          VA L  I+T+  ++ S++E E
Sbjct: 80  SQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERE 139

Query: 152 KHNMCYELVDSDNDPKAVMFEYLHQTAFQGTPLAQSVIGPSKNIQNFDSQLLSSFMTDHY 211
           +  +  E  + D     V+F++LH TA+QG PL ++++GP +NI++   + L  ++ D+Y
Sbjct: 140 RQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNY 199

Query: 212 QPYKVCFATSGNVDHKEVVRIAETMCGKMVGDPT-KQFGRG-----PCRFTGSQIMYRDD 265
           +  ++  +++G++ H+E+V++AE   G +  +P+ +Q   G       RF GS+I  RDD
Sbjct: 200 RSDRMIISSAGSISHEELVKLAEKYFGHL--EPSAEQLSLGAPRGLKPRFVGSEIRARDD 257

Query: 266 SMPCAHVAIGFEVPGYGHEDYLKLLVMGCMMGAWDKSQGGG-NSNVPVLACAAASGLCES 324
             P A++AI  E   + H DY   LVM  ++G WD++ G   + +  +        L  S
Sbjct: 258 DSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANS 317

Query: 325 YEPFYFPYGDIGLWGVYYVGQPL-VLEDMLNNIQDYWMKMCVSVHYTDLERAKNLAKLKV 383
           +  F   Y D GLWG+Y V + L  ++D+++     W ++ V+    ++ERAK   +  +
Sbjct: 318 FMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTVATR-AEVERAKAQLRASL 376

Query: 384 AKMFDGTVNSSYDIGMQLMYFCGRKPLISQYEL-LSNIKPDSIREAADKYLYDRCPAVAC 442
               D T   + DIG QL+   GR+    + +L +  I    +   A + ++D+  AV+ 
Sbjct: 377 LLSLDSTTAIAEDIGRQLL-TTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSA 435

Query: 443 VGPTEGMPDYTKIRA 457
           VG  EG+ DY +IR+
Sbjct: 436 VGSIEGLLDYNRIRS 450


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 80/392 (20%), Positives = 156/392 (39%), Gaps = 28/392 (7%)

Query: 29  DPNDPGTKISLLPNGVRIATEQTQSPLACVSLFIEAGPRFETPENNGASHFLEHMAFCGF 88
           DP     +   L NGV    +      + + ++++AG R+ET + +G SHF++ +AF   
Sbjct: 40  DPALNEVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQAT 99

Query: 89  KSMNQCEIEHNLLQMGAKINAETTKEIQRFVAICPSENAHEMVAFLCRIITDLDLNDSSI 148
           +     E++  L  +G      T++E   + A   +++   M   L   +    + +  +
Sbjct: 100 ERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDL 159

Query: 149 ETEKHNMCYELVDSDNDPKAVMFEYLHQTAFQGTPLAQSVIGPSKNIQNFDSQLLSSFMT 208
              + ++ YE  +    P A++ E+ H TAFQ   L   ++     +    +  +  ++ 
Sbjct: 160 VHYRDSIIYENSELWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLK 219

Query: 209 DHYQPYKVCFATSGNVDHKEVVRIAETMCGKMVGDPTKQFGRGPCRFTGSQIMYRDDSMP 268
             Y+P  +  A +G +  +    I + + G +           P  +TG  +  +    P
Sbjct: 220 YFYRPEHLTLAYAG-IPQEIAKEITKELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAP 278

Query: 269 -------CAHVAIGFE-VPGYGHEDYLKLLVMGCMMGAWDKSQGG---GNSNVPVLACAA 317
                    HV I  E +P    + Y    +   + G    S GG   G  +   L    
Sbjct: 279 PVPYQQEFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLN 338

Query: 318 ASGLCESYEPFYFPYGDIGLWGVY--------YVGQPLVLEDMLNNIQDYWMKMCVSVHY 369
                E+   F   Y D GL+G++        ++  PL++ ++ N +        +SV  
Sbjct: 339 QYPWVETCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTV--------LSVTS 390

Query: 370 TDLERAKNLAKLKVAKMFDGTVNSSYDIGMQL 401
            + ERAKN  K  +    +  + S  D+G Q+
Sbjct: 391 EETERAKNQLKSSLLMNLESRMISLEDLGRQI 422


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 43  GVRIATEQTQSPLACVSLFIEAGPRFETPENNGASHFLEHMAFCGFKSMNQCEIEHNLLQ 102
           GV  A  +T +    +S+ I AG R++   + G SH LE  AF   +  +   I      
Sbjct: 30  GVSFAGRETPTATGSLSVVINAGSRYQP--DAGVSHLLEKFAFKTTEERSALRITRESEL 87

Query: 103 MGAKINAETTKE 114
           +G +++ + T+E
Sbjct: 88  LGGQLSTQITRE 99


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 68  FETPENN--GASHFLEHMAFCG 87
           F+TP  N  G  H LEH   CG
Sbjct: 79  FQTPAENDEGIPHILEHTTLCG 100



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 142 DLNDSSIETEKHNMCY-ELVDSDNDPKAVMFEYLHQTAFQGTPLAQSVIGPSKNIQNFDS 200
           D+ND       + + Y E+    +D   + +    Q  FQGT    +  G    I +   
Sbjct: 175 DVNDKKSPIIFNGVVYNEMKGQVSDSSYIFYMLFQQHLFQGTAYGFNSGGDPLAIPDLKY 234

Query: 201 QLLSSFMTDHYQP 213
           + L  F   HY P
Sbjct: 235 EELVKFHRSHYHP 247


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,224
Number of Sequences: 5004
Number of extensions: 97181
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 5
length of query: 464
length of database: 2,362,478
effective HSP length: 75
effective length of query: 389
effective length of database: 1,987,178
effective search space: 773012242
effective search space used: 773012242
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)