GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002079-TA|BGIBMGA002079-PA|IPR013032|EGF-like region,
IPR003961|Fibronectin, type III, IPR001660|Sterile alpha motif SAM,
IPR000719|Protein kinase, IPR008266|Tyrosine protein kinase, active
site, IPR001426|Receptor tyrosine kinase, class V, IPR001090|Ephrin
receptor, ligand binding, IPR001245|Tyrosine protein kinase,
IPR003962|Fibronectin, type III subdomain, IPR011009|Protein
kinase-like, IPR008979|Galactose-binding like, IPR008957|Fibronectin,
type III-like fold, IPR010993|Sterile alpha motif homology
         (945 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...   145   1e-36
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    51   3e-08
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   1.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   1.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   5.6  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score =  145 bits (351), Expect = 1e-36
 Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 676 NDGKFRVLQLVGMLRGIATGMQYLSEMNYIHRDLAARNVLVNSQLVCKIADFGLSREIES 735
           ND   +   L+ + R +A GM++L++   +HRDLAARNVLV      K++DFGLSR++  
Sbjct: 585 NDFIIQPKHLLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQ 644

Query: 736 TADGAYTTRGG-KIPVRWTAPEAIAFRKFTSASDVWSMGIVCWEVMSFGERPYWNWSNQD 794
             D  Y   GG K+PVRW A E++  +++T+ SDVWS G++ WE+++ G  PY    + +
Sbjct: 645 --DNVYCKNGGGKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSE 702

Query: 795 VIKSIEKGYRLPAPMDCPEAVYQLMLDCWQKERTHRPTFSSIVKTLDKLI 844
           ++  ++ G RL  P +C   +Y +ML+CW++   +RPTF+ + K+L+ L+
Sbjct: 703 LLDFLKSGNRLARPANCSPDLYAVMLNCWKECPKNRPTFTELSKSLEGLL 752



 Score = 52.8 bits (121), Expect = 1e-08
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 581 ITIEAIIGGGEFGDVCRGKLKLPASCGPEIDVAIKTLKPGSTERARRDFLAEASIMGQF- 639
           ++ + +IG G FG V R  L L      +  VA+K LK   T    R F  E +IM    
Sbjct: 451 LSFQGVIGEGAFGIVRRAFLDLKED--NKTQVAVKMLKESPTSEEIRQFTQEINIMKSVR 508

Query: 640 EHPNVIFLQGVVT--KCNPIMIITEFMENGSLDTFLRANDGKFRVLQ 684
           +HP ++ L G VT  +    +++ E+   G L T+LR    KF  +Q
Sbjct: 509 QHPYIVSLIGCVTEGRAEGPLLVVEYCSRGDLQTYLRTAWDKFTNMQ 555


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 51.2 bits (117), Expect = 3e-08
 Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 19/211 (9%)

Query: 262  PPSAPDNLTVTFADQFSISLTWQPPHNTGGRSDIT-YKIS--CANCGPTVEFRPGETGLN 318
            P   P ++ V   DQ S+ + W+PP       DI  Y +    AN      F   E G  
Sbjct: 995  PGGPPTSIRVETNDQHSLVVYWKPPAREEWNGDILGYYVGYRLANSDKPYLFETVEFGRE 1054

Query: 319  STR---VTISGLDPVTEYKFQVYAEN--GVSELSPDPANHIEITAVT-EAXXXXXXXKLR 372
              +   + IS L   T+Y   V A N  G   LS D      I A T E        K  
Sbjct: 1055 EGKEHHLKISNLKTYTQYSVVVQAFNKVGAGPLSDD------IKAYTAEGVPEQPPDKAT 1108

Query: 373  ILNTESDRLTIAWNPPQVDLTDPDDTIESYEVKCFPKDSQ-DKNTNTTLRITKDPQVTIT 431
                 +  + ++W  P   LT  +  I+ Y+V   P D+  D+NT  T +IT   +  + 
Sbjct: 1109 CTTLTAQTIRVSWVSPP--LTAANGVIKGYKVIYGPSDTWFDENTKDT-KITAASETILH 1165

Query: 432  GLRKDTEYGIRVRAKMKRGWGEFSGIVYART 462
            GL+K T Y + V A    G G  +  ++ +T
Sbjct: 1166 GLKKYTNYSMEVLAYTSGGDGVRTTPIHCQT 1196



 Score = 41.5 bits (93), Expect = 3e-05
 Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 14/207 (6%)

Query: 263  PSAPDNLTVTFADQFSISLTWQPPHNTGG---RSDITYKISCANCGPTVE--FRPGETGL 317
            P  P  L V      S+ L+W  P +      R  I YK S  +     E    PG+   
Sbjct: 896  PEVPYGLKVLDKSGRSVQLSWVAPFDGNSPITRYMIEYKQSKVSWEGNTERVLVPGD--- 952

Query: 318  NSTRVTISGLDPVTEYKFQVYAENGVSELSPDPANHIEITAVTEAXXXXXXXKLRILNTE 377
              T   +  L P T Y  ++ AEN +   S +P+  + I    E         +R+   +
Sbjct: 953  -QTEAGVFTLRPATTYHIRIVAENEIG--SSEPSETVTIITAEEV-PGGPPTSIRVETND 1008

Query: 378  SDRLTIAWNPPQVDLTDPD--DTIESYEVKCFPKDSQDKNTNTTLRITKDPQVTITGLRK 435
               L + W PP  +  + D       Y +    K    +         K+  + I+ L+ 
Sbjct: 1009 QHSLVVYWKPPAREEWNGDILGYYVGYRLANSDKPYLFETVEFGREEGKEHHLKISNLKT 1068

Query: 436  DTEYGIRVRAKMKRGWGEFSGIVYART 462
             T+Y + V+A  K G G  S  + A T
Sbjct: 1069 YTQYSVVVQAFNKVGAGPLSDDIKAYT 1095


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 193 KCRAGFEPDHNNQICTECAP 212
           KCRA +  D  NQ C  C P
Sbjct: 573 KCRARYGLDQQNQWCKPCRP 592


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 193 KCRAGFEPDHNNQICTECAP 212
           KCRA +  D  NQ C  C P
Sbjct: 465 KCRARYGLDQQNQWCKPCRP 484


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 226 PCPDHSESTIYAAAECKCTPKYYRAKKDPKTIPCTQPPSAPDNLTVTFADQFSIS 280
           P P  + +T       K T K    K   K +  T+PP AP   TV    Q ++S
Sbjct: 160 PLPPTTSTTTRTTLTTKFTTKP-STKPTNKPVVVTKPPQAPPFATVGANLQATVS 213


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,590
Number of Sequences: 317
Number of extensions: 9928
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 945
length of database: 114,650
effective HSP length: 63
effective length of query: 882
effective length of database: 94,679
effective search space: 83506878
effective search space used: 83506878
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)