Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002078-TA|BGIBMGA002078-PA|IPR005833|Haloacid
dehydrogenase/epoxide hydrolase, IPR011949|HAD-superfamily hydrolase,
subfamily IA, REG-2-like, IPR006439|HAD-superfamily hydrolase,
subfamily IA, variant 1, IPR005834|Haloacid dehalogenase-like
hydrolase
         (238 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical pr...    93   1e-19
U97001-1|AAB52259.1|  257|Caenorhabditis elegans Hypothetical pr...    36   0.026
U97012-2|AAK39140.1|  241|Caenorhabditis elegans Hypothetical pr...    32   0.32 
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z81534-2|CAB04344.2|  226|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC199169-13|ABO33252.1|  103|Caenorhabditis elegans Hypothetical...    27   9.0  

>Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical
           protein K01G5.10 protein.
          Length = 248

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 62/196 (31%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 3   PSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEEWWRQVVKLTLQD 62
           P   Y++ AR Y              +N+K M    P FG N I  + WW +VV  TL D
Sbjct: 37  PPIVYSRFARQYDLEVDSDQIMGSFLKNYKRMSIASPCFGFNGIGNKSWWIEVVSSTLLD 96

Query: 63  HLPVGADTR--SLGNTLINDFKTSKCWDVAAGSDT--LLQXXXXXXXXXXXXSNSDPRLY 118
             P     R   +   L N + T + W +   SDT   LQ            SN D RL 
Sbjct: 97  CAPDSEKGRVEVIAGALYNHYATPEPWKLVE-SDTRQTLQKLRLKGIILVVISNFDSRLK 155

Query: 119 DILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIG 178
            +L    L   F   + S + G+ KPD +IFQ  ++   ++   SE LHIGD+L+ D+ G
Sbjct: 156 SLLSQFNLLDLFSMTVLSGEIGYEKPDEKIFQ-LVVNHFDLISPSEILHIGDNLKNDFHG 214

Query: 179 ARESGWHALLISNNET 194
           A+  G  ALL  ++ +
Sbjct: 215 AKNFGCRALLFDSSSS 230


>U97001-1|AAB52259.1|  257|Caenorhabditis elegans Hypothetical
           protein K08B12.3 protein.
          Length = 257

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 143 KPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESGWHALLISNNE 193
           KP+   F+ AL    E    S ++ IGDD+  D +GA + G  A+L+   +
Sbjct: 176 KPNKLFFESALQSLNENVDFSSAVMIGDDVNDDALGAIKIGMRAILVKTGK 226


>U97012-2|AAK39140.1|  241|Caenorhabditis elegans Hypothetical
           protein C04E6.7 protein.
          Length = 241

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 126 LSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGD 170
           + KYFD ++ S   G  KPD R +Q A L C ++ +  E ++I D
Sbjct: 162 MEKYFDHVIESCKEGVKKPDPRFYQIA-LDCVDV-QPEEVIYIDD 204


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 130 FDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESGWHALLI 189
           FD +L S   G  KPD++I++ AL R K     S+ + + DDL  +   A+E G   + +
Sbjct: 140 FDDVLESCRLGLRKPDTKIYELALERSK--LHPSDCVFL-DDLGSNLKSAKEMGITTIKV 196

Query: 190 SNNETKI 196
            +++  I
Sbjct: 197 VSSQQAI 203


>Z81534-2|CAB04344.2|  226|Caenorhabditis elegans Hypothetical
           protein F37H8.3 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 129 YFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESGWHALL 188
           +FD ++ S      KPD+R +    L  K +    E +   DDL ++   A + GW+ +L
Sbjct: 150 HFDEVVESCLEHLMKPDARFYH---LVEKRLGVKPEEIVFLDDLHENIEAAEKLGWNTIL 206

Query: 189 ISNNETKI 196
           + + E  I
Sbjct: 207 VEDIEKAI 214


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 131 DFILT-SYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGAR 180
           DF+L  S  C F++ DS I++EA+   K + +    L  GDD  +  +  R
Sbjct: 780 DFMLMLSNACKFNETDSDIYKEAVSLQKALLEMKRELDTGDDAPRVQVELR 830


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 131 DFILT-SYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGAR 180
           DF+L  S  C F++ DS I++EA+   K + +    L  GDD  +  +  R
Sbjct: 780 DFMLMLSNACKFNETDSDIYKEAVSLQKALLEMKRELDTGDDAPRVQVELR 830


>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 114 DPRLYDILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLE 173
           DP++Y ++ ++  ++   F    +   F +    +  E   +  E+  A++ L I DD  
Sbjct: 747 DPQIYALISDIDYAQALSFAFRWFLLDFKR---ELSYECTYKVWEVIWAAQRLRITDDFA 803

Query: 174 KDYIGARESGWHALLISNN 192
             +  A  + +H +LI+NN
Sbjct: 804 IFFGLATITNYHDVLITNN 822


>AC199169-13|ABO33252.1|  103|Caenorhabditis elegans Hypothetical
          protein F38A1.13 protein.
          Length = 103

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 56 VKLTLQDHLPVGADTRSLGNTLIND 80
          V LT+QDHLP+ +  RSL  ++ ND
Sbjct: 16 VTLTIQDHLPIDS-FRSLNLSITND 39


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,637,701
Number of Sequences: 27539
Number of extensions: 219536
Number of successful extensions: 485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 9
length of query: 238
length of database: 12,573,161
effective HSP length: 79
effective length of query: 159
effective length of database: 10,397,580
effective search space: 1653215220
effective search space used: 1653215220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)