GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002078-TA|BGIBMGA002078-PA|IPR005833|Haloacid
dehydrogenase/epoxide hydrolase, IPR011949|HAD-superfamily hydrolase,
subfamily IA, REG-2-like, IPR006439|HAD-superfamily hydrolase,
subfamily IA, variant 1, IPR005834|Haloacid dehalogenase-like
hydrolase
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      71   2e-13
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    28   1.0  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   5.6  

>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 14/186 (7%)

Query: 7   YTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILW-EEWWRQVVKLTLQDHLP 65
           Y+++A+ YG   +  + ++     FK   E+H N G+ S L   +WW +V++ +    +P
Sbjct: 32  YSEVAQKYGVHATIDEIEHN---TFKDFSEKHKNHGKKSGLNPHDWWIKVIEHSFPTPVP 88

Query: 66  VGADTRSLGNTLINDFKTSKCWDV-AAGSDTLLQXXXXXXXXXXXXSNSDPRLYDILQNL 124
                  +   L + F     + +     D L +            SN+D R+  +L++ 
Sbjct: 89  A-----EMAEELWSYFSKKTGYTIHPLLIDFLKRNKEERKYIIGIISNTDERIRTVLEDY 143

Query: 125 GLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEI----TKASESLHIGDDLEKDYIGAR 180
           G+    D    SYD GF KP   IF  A+ +  ++     +  E +H+GDDL KD   AR
Sbjct: 144 GIDHLIDIYAFSYDVGFEKPSREIFDYAMEKAVKLLGQEIQPEECMHLGDDLIKDVSAAR 203

Query: 181 ESGWHA 186
              W+A
Sbjct: 204 NIQWNA 209


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 120 ILQNLGLSKYFDFIL-TSYDCG--FSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDY 176
           +L+ LG+   FD I    Y+     +KP   ++ E ++R   +T   + + + DD   + 
Sbjct: 122 VLKYLGIEDCFDGITYCDYNAKDLIAKPMPEMY-ERVMREAGVTDKDKCIFV-DDSYGNI 179

Query: 177 IGARESGWH---ALLISNNETKIPPAKDHVFANI 207
           +GARE GW     L+   +    P A  HV  +I
Sbjct: 180 LGAREFGWKYTVQLVEHGDPLPQPQAGSHVIRDI 213


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 164 ESLHIGDDLEKDYIGARESGWHALLI 189
           E   +GD+ E D  GA   GW ++L+
Sbjct: 297 EIFMVGDNPESDIRGANNYGWTSILV 322


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,078,138
Number of Sequences: 5004
Number of extensions: 43023
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 3
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)