Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002078-TA|BGIBMGA002078-PA|IPR005833|Haloacid
dehydrogenase/epoxide hydrolase, IPR011949|HAD-superfamily hydrolase,
subfamily IA, REG-2-like, IPR006439|HAD-superfamily hydrolase,
subfamily IA, variant 1, IPR005834|Haloacid dehalogenase-like
hydrolase
(238 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569 69 3e-12
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876... 64 7e-11
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 61 9e-10
07_03_1560 - 27730241-27730336,27730471-27730644,27730746-277309... 60 1e-09
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 28 5.8
02_03_0349 + 18010414-18014283 28 5.8
08_01_0948 - 9405356-9406042,9406214-9406303,9406533-9406644,940... 28 7.7
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431... 28 7.7
01_01_0743 - 5763654-5766902 28 7.7
>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
Length = 272
Score = 68.9 bits (161), Expect = 3e-12
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 6 YYTKIARTYGYRGSESDAQNKMRENFKMMWEQ----HPNFGRNSILWE-EWWRQVVKLTL 60
YY A++ G + +M E FK + + HP FG S + +WW+ VK +
Sbjct: 28 YYCMAAKSAGMPCPD---YKRMHEGFKAAYTEMTVRHPCFGHASNMPNIDWWKMCVKDSF 84
Query: 61 --QDHLPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXXXXXXXXXSNSDPRLY 118
+ A + + + F +S + V + L+ SN++ R
Sbjct: 85 IRAGYEYDDATFEKIFRRIYSTFGSSAPYSVFPDAQQFLRWLRNNGCTVGIVSNAEYRYK 144
Query: 119 DI-LQNLGLSK--YFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKD 175
D+ L LGL++ +DF + S G KPD R+++ AL + A+E+LHIGD + KD
Sbjct: 145 DVVLPALGLNEGSEWDFGVFSGIVGVEKPDRRMYEAALEMAGGVA-AAEALHIGDSMRKD 203
Query: 176 YIGARESGWHALLISNNET 194
Y AR +G HALL+ T
Sbjct: 204 YAPARRAGMHALLLDRFRT 222
>06_03_1041 -
27086661-27086981,27087089-27087295,27087398-27087675,
27088360-27088471
Length = 305
Score = 64.5 bits (150), Expect = 7e-11
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 14/199 (7%)
Query: 6 YYTKIARTYGYRGSESDAQNKMRENFKM----MWEQHPNFGRNSILWE-EWWRQVVKLT- 59
YY A+ G +M E FK+ M Q+P FG + + +WWR VK +
Sbjct: 72 YYCMAAKA---AGKPCPDYQRMHEGFKLAYTEMARQYPCFGFAAKMPNIDWWRMCVKDSF 128
Query: 60 LQDHLPVGADT-RSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXXXXXXXXXSNSDPRLY 118
++ +T + + + F +S + V + ++ SN++ R
Sbjct: 129 VKAGYEYDEETFEKIFKRIYSSFGSSAPYSVFPDAQPFMRWLRGKGLTVGIVSNAEYRYK 188
Query: 119 D-ILQNLGLSK--YFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKD 175
D IL LGL++ +DF + S G KPD I++ AL ++ E+LHIGD + KD
Sbjct: 189 DVILPALGLNQGSEWDFGVFSGIVGVEKPDPSIYRIALEMAGKVAP-EEALHIGDSMRKD 247
Query: 176 YIGARESGWHALLISNNET 194
Y AR G HALL+ +T
Sbjct: 248 YTPARSIGMHALLLDRFKT 266
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 60.9 bits (141), Expect = 9e-10
Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 11/200 (5%)
Query: 4 SQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEEWWRQVVKLTLQDH 63
+Q Y + R YG SE + + F W + + + +WR VV +
Sbjct: 77 AQTYASLGRRYGMSKSEESIKEGFKRAFSAPWPKTLRYQGDG---RPFWRIVVAEATE-- 131
Query: 64 LPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXXXXXXXXXSNSDPRLYDILQN 123
+ + W + AG+ L+ SN D RL +L++
Sbjct: 132 ----CTNNDYFEEVYEYYAHGDAWRLPAGAYETLRDLKDAGVKLAVVSNFDTRLRKLLKD 187
Query: 124 LGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESG 183
L +S FD I+ S + G KP IF+ AL + +AS+++H+GDD D GA G
Sbjct: 188 LHVSDMFDAIVVSSEVGHEKPAPEIFKRALDQIG--VEASKAVHVGDDETADKAGANAIG 245
Query: 184 WHALLISNNETKIPPAKDHV 203
L + +D +
Sbjct: 246 LECWLWGQDVRTFSEIQDRI 265
>07_03_1560 -
27730241-27730336,27730471-27730644,27730746-27730907,
27730993-27731101,27732268-27732374,27732875-27733141
Length = 304
Score = 60.5 bits (140), Expect = 1e-09
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 21/206 (10%)
Query: 4 SQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEE----WWRQVVKLT 59
+Q Y I YG SE + + R + W GR+ + + + +W+ +V +
Sbjct: 88 AQVYRTIGEKYGVNYSEDEILMRYRRAYAQPW------GRSRLRYVDDGRPFWQHIVSSS 141
Query: 60 LQDHLPVGADTRSLGNTLINDFKTSKCWDVA-AGSDTLLQXXXXXXXXXXXXSNSDPRLY 118
G L + T+K W + + + + SN D RL
Sbjct: 142 ------TGCSDLQYFEELYQYYTTAKAWQLCDPDAKYVFEALRKAGVKTAVVSNFDTRLR 195
Query: 119 DILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEI-TKASESLHIGDDLEKDYI 177
+LQ L +FD + S + KP+ IF +A C+ + K E++HIGDD D
Sbjct: 196 PLLQALNCDHWFDAVAVSAEVAAEKPNPTIFLKA---CEFLGVKPEEAVHIGDDRRNDLW 252
Query: 178 GARESGWHALLISNNETKIPPAKDHV 203
GAR++G A L ++ + H+
Sbjct: 253 GARDAGCDAWLWGSDVYSFKENQAHI 278
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 144 PDSRIFQEALLRCKEITK--ASESLHIGDDLEKDYIGARESGWHALLI---SNNETKIPP 198
P+ + L +ITK E ++ GD L D G ++GW + +E +I
Sbjct: 316 PNEVYYHGCLKSFLQITKWRGPEVIYFGDHLLSDLRGPAKAGWRTAAVIRELEDEIEIQN 375
Query: 199 AKDHVFANIDLLSIAISQNKLKTFED 224
+ F + L S+ + Q KL D
Sbjct: 376 GDSYRFQQVALTSLTL-QAKLSIIHD 400
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 126 LSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGD 170
++K FD++ + + G KP ++ L + K + A + HIGD
Sbjct: 22 INKAFDYLKDNKEAGGLKPTRERLEKLLPQIKVVLDAVDMEHIGD 66
>08_01_0948 -
9405356-9406042,9406214-9406303,9406533-9406644,
9407065-9407162,9407494-9407697,9407796-9408285,
9409711-9409715
Length = 561
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 20 ESDAQNKMRENFKMMWEQH--PNFGRNSILWEEW--------WRQVVKLTLQDHLPVGAD 69
++D + F+MM +H F +S W W WR+ + Q VG
Sbjct: 441 QADDIKCVASTFRMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRR--RQNRQKMAEVGLS 498
Query: 70 TRSLGN-TLINDFKTSKCWDVAAGSDTL 96
R +L+NDF ++C D+ S T+
Sbjct: 499 NRWKSFFSLVNDFNDTRCEDINGSSSTV 526
>03_01_0581 +
4310136-4310186,4310940-4311144,4311245-4311410,
4312035-4312257,4312891-4312967,4313091-4313278,
4313363-4313457,4313674-4313807,4313914-4314024,
4314304-4314619,4314919-4315040,4315183-4315293,
4315824-4316012,4316105-4316263,4316449-4316530,
4317080-4317190
Length = 779
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 31 FKMMWEQHPNFGRNSILWEEWWRQVVKLTLQD 62
+K+ +QH N GR L EE R +K +L D
Sbjct: 578 WKLDSDQHYNIGRQGTLTEETGRSFIKRSLSD 609
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 178 GARESGWHALLISNNETKIPPAKDHVFANIDLL 210
G R+ GW NE +I P H +DLL
Sbjct: 825 GLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLL 857
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,561,398
Number of Sequences: 37544
Number of extensions: 249328
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 10
length of query: 238
length of database: 14,793,348
effective HSP length: 80
effective length of query: 158
effective length of database: 11,789,828
effective search space: 1862792824
effective search space used: 1862792824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -