GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002078-TA|BGIBMGA002078-PA|IPR005833|Haloacid
dehydrogenase/epoxide hydrolase, IPR011949|HAD-superfamily hydrolase,
subfamily IA, REG-2-like, IPR006439|HAD-superfamily hydrolase,
subfamily IA, variant 1, IPR005834|Haloacid dehalogenase-like
hydrolase
         (238 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   2.6  
AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.     24   3.4  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/29 (31%), Positives = 11/29 (37%)

Query: 29  ENFKMMWEQHPNFGRNSILWEEWWRQVVK 57
           E F+  W       RN   W  WW +  K
Sbjct: 261 EEFRCKWNNWTKQRRNYGTWISWWVEFAK 289


>AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 206 NIDLLSIAISQNKLKTFEDAAKVLRLDIVIPRI 238
           N+  L I   QNKLK +    ++L+  I+ PRI
Sbjct: 421 NLVALLIEGLQNKLKIYRSNEQILKSMILDPRI 453


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,578
Number of Sequences: 2123
Number of extensions: 8385
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 238
length of database: 516,269
effective HSP length: 62
effective length of query: 176
effective length of database: 384,643
effective search space: 67697168
effective search space used: 67697168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)