GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002078-TA|BGIBMGA002078-PA|IPR005833|Haloacid
dehydrogenase/epoxide hydrolase, IPR011949|HAD-superfamily hydrolase,
subfamily IA, REG-2-like, IPR006439|HAD-superfamily hydrolase,
subfamily IA, variant 1, IPR005834|Haloacid dehalogenase-like
hydrolase
         (238 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44730.2 68418.m05482 haloacid dehalogenase-like hydrolase fa...    69   3e-12
At5g44730.1 68418.m05481 haloacid dehalogenase-like hydrolase fa...    69   3e-12
At1g14310.1 68414.m01696 haloacid dehalogenase-like hydrolase fa...    58   5e-09
At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase fa...    56   3e-08
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    35   0.042
At4g35990.1 68417.m05125 hypothetical protein                          33   0.23 
At2g33680.1 68415.m04128 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At5g10460.1 68418.m01212 haloacid dehalogenase-like hydrolase fa...    29   3.7  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   6.4  
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote...    27   8.5  

>At5g44730.2 68418.m05482 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|Q94915 Rhythmically
           expressed gene 2 protein (DREG-2) {Drosophila
           melanogaster}; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 255

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 14/223 (6%)

Query: 6   YYTKIARTYGYRGSESDAQNKMRENFKM----MWEQHPNFGRNSILWE-EWWRQVVKLT- 59
           YY   A+  G    +     ++ E FK+    M +++P FG ++ +    WW+  V+ + 
Sbjct: 30  YYCMAAKAIGLPCPD---YKRVHEGFKLAYTDMAQKYPCFGFHAKMPNIVWWKTCVRDSF 86

Query: 60  LQDHLPVGADT-RSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXXXXXXXXXSNSDPRLY 118
           ++       +T   +   + + F ++  + V   S   L+            SN++ R  
Sbjct: 87  VKAGYEYDEETFEKIFRRIYSTFGSAAPYSVFQDSQPFLRWARRKGLIVGLVSNAEYRYQ 146

Query: 119 D-ILQNLGLSKY-FDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDY 176
           + IL + GLSK  +DF + S   G  KPD RIF  AL R        E LHIGD + KDY
Sbjct: 147 EVILPSFGLSKAEWDFGVFSGIEGIEKPDPRIFTLALERAGNNIAPEEVLHIGDSMRKDY 206

Query: 177 IGARESGWHALLISNNETKIPPAKDHVFANIDLLSIAISQNKL 219
           + A+  G HALL+   +T+   AKD + A   +L   ++  +L
Sbjct: 207 VPAKSIGMHALLVDRFKTE--AAKDWIEAGAIVLPDLVAVQQL 247


>At5g44730.1 68418.m05481 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|Q94915 Rhythmically
           expressed gene 2 protein (DREG-2) {Drosophila
           melanogaster}; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 255

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 14/223 (6%)

Query: 6   YYTKIARTYGYRGSESDAQNKMRENFKM----MWEQHPNFGRNSILWE-EWWRQVVKLT- 59
           YY   A+  G    +     ++ E FK+    M +++P FG ++ +    WW+  V+ + 
Sbjct: 30  YYCMAAKAIGLPCPD---YKRVHEGFKLAYTDMAQKYPCFGFHAKMPNIVWWKTCVRDSF 86

Query: 60  LQDHLPVGADT-RSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXXXXXXXXXSNSDPRLY 118
           ++       +T   +   + + F ++  + V   S   L+            SN++ R  
Sbjct: 87  VKAGYEYDEETFEKIFRRIYSTFGSAAPYSVFQDSQPFLRWARRKGLIVGLVSNAEYRYQ 146

Query: 119 D-ILQNLGLSKY-FDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDY 176
           + IL + GLSK  +DF + S   G  KPD RIF  AL R        E LHIGD + KDY
Sbjct: 147 EVILPSFGLSKAEWDFGVFSGIEGIEKPDPRIFTLALERAGNNIAPEEVLHIGDSMRKDY 206

Query: 177 IGARESGWHALLISNNETKIPPAKDHVFANIDLLSIAISQNKL 219
           + A+  G HALL+   +T+   AKD + A   +L   ++  +L
Sbjct: 207 VPAKSIGMHALLVDRFKTE--AAKDWIEAGAIVLPDLVAVQQL 247


>At1g14310.1 68414.m01696 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 254

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 11/177 (6%)

Query: 7   YTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPV 66
           Y  + + YG + + ++ +   +  F   W +   +  +      +W+ VV          
Sbjct: 64  YASLGQKYGLKTTPAEIKEGFKRVFSAPWPEKLRYQGDG---RPFWKLVVSEA------T 114

Query: 67  GADTRSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXXXXXXXXXSNSDPRLYDILQNLGL 126
           G         +   +   + W +  G+   +             SN D RL  +L++L +
Sbjct: 115 GCSDNDYFEDVYQYYANGEAWHLPEGAYETMSLLKDAGVKMAVVSNFDTRLRKLLKDLNV 174

Query: 127 SKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESG 183
              FD ++ S + G+ KPD RIF+ AL +       + ++H+GDD   D  GA   G
Sbjct: 175 IDMFDAVIVSAEVGYEKPDERIFKSALEQIS--VDVNRAVHVGDDEGADKGGANAIG 229


>At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|Q94915 Rhythmically
           expressed gene 2 protein (DREG-2) {Drosophila
           melanogaster}; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 290

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 15/194 (7%)

Query: 4   SQYYTKIARTYGYRGSESDAQNKMRENFKMMWE-QHPNFGRNSILWEEWWRQVVKLTLQD 62
           +Q Y  I   YG   SE++   + R  ++  W   H  +  ++     +W+ +V  +   
Sbjct: 96  AQIYKNIGEKYGVEYSEAEILTRYRRAYQKPWGGSHLRYVNDA---RPFWQYIVTAS--- 149

Query: 63  HLPVGADTRSLGNTLINDFKTSKCWDVA-AGSDTLLQXXXXXXXXXXXXSNSDPRLYDIL 121
               G         L + F T + W +    +  + +            SN D RL  +L
Sbjct: 150 ---TGCSDSQYFEELYSYFTTEQAWKLCDPDAGKVFKAIKEAGVKVAIVSNFDTRLRPLL 206

Query: 122 QNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEI-TKASESLHIGDDLEKDYIGAR 180
           + L    +FD +  S +    KP+  IF +A   C+ +     +++H+GDD   D  GAR
Sbjct: 207 RALRCEDWFDAVAVSAEVEAEKPNPTIFLKA---CELLEVNPEDAVHVGDDRRNDVWGAR 263

Query: 181 ESGWHALLISNNET 194
           ++G  A L  +  T
Sbjct: 264 DAGCDAWLWGSEVT 277


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 116 RLYDILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKAS-ESLHI---GDD 171
           R++D + N  +  +   I+     GF        +EAL+  KE+  A  E  H+   G  
Sbjct: 529 RIFDSMDNRDVVSWSTLIVGYAQSGFG-------EEALILFKEMKSAGIEPNHVTFVGVL 581

Query: 172 LEKDYIGARESGWHALLISNNETKIPPAKDHVFANIDLLSIAISQNKLKTFEDAAKVLRL 231
               ++G  E G         E  I P K+H    +DLL+ A   N+ + F D  K L  
Sbjct: 582 TACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMK-LEP 640

Query: 232 DIVI 235
           D+V+
Sbjct: 641 DVVV 644


>At4g35990.1 68417.m05125 hypothetical protein 
          Length = 129

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 126 LSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHI----GDDLEKDYIGARE 181
           L+  FD I+ S DC F K   +     +    +  KASE+L      GD LEK     ++
Sbjct: 23  LTNTFDIIVAS-DCTFFKEFHKDLARTIKMLLKAKKASEALFFSPKRGDSLEKFMKEIKD 81

Query: 182 SGWHALLISNNETKI 196
            G H +L  N + ++
Sbjct: 82  IGLHYILTENYDAQV 96


>At2g33680.1 68415.m04128 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 727

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 178 GARESGWHALLISNNETKIPPAKDHVFANIDLLSIAISQNKLKTFEDAAKV 228
           G  E GW    + +++  + P  DH    +DLLS A    + K F ++A +
Sbjct: 538 GFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANI 588


>At5g10460.1 68418.m01212 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 306

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 143 KPDSRIFQEALLRCKEITKASESLHIGDDLEKDYIGARESGWHALLIS 190
           KP   I++ A+         SES+ +GD L  D  GA  SG  ++ I+
Sbjct: 219 KPHKMIYESAIAIAG--VNPSESIAVGDSLHHDIRGANVSGIESIFIT 264


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 33  MMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADT-RSLGNTL 77
           +M EQH    R   +W +W+      T+ + L   AD+ R +G+ L
Sbjct: 863 LMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWL 908


>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
           / Rab GTPase activator family protein similar to
           SP|P26374 Rab proteins geranylgeranyltransferase
           component A 2 (Rab escort protein 2) {Homo sapiens};
           contains Pfam profile PF00996: GDP dissociation
           inhibitor
          Length = 563

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 190 SNNETKIPPAKDHVFANIDLL------SIAISQNKLKTFEDAAKVLRLDIVIPRI 238
           S +   +PP+ +H F ++DL+      S+ IS  + +  E+ ++   +D+  PR+
Sbjct: 75  SPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFNVDLAGPRV 129


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,493,777
Number of Sequences: 28952
Number of extensions: 217966
Number of successful extensions: 480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 12
length of query: 238
length of database: 12,070,560
effective HSP length: 79
effective length of query: 159
effective length of database: 9,783,352
effective search space: 1555552968
effective search space used: 1555552968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)